Syngnathus scovelli (Gulf pipefish): 125981242
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Entry
125981242 CDS
T08785
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125981242 (pnn)
03015 mRNA surveillance pathway
125981242 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125981242 (pnn)
03041 Spliceosome [BR:
sscv03041
]
125981242 (pnn)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125981242 (pnn)
Spliceosome [BR:
sscv03041
]
Complex C
Other components
EJC/TREX
125981242 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
125981242
NCBI-ProteinID:
XP_049597146
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Position
14:complement(14909426..14913280)
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AA seq
685 aa
AA seq
DB search
MAVAVRSLQEQIEKAKEGLRNVDDNIRKLTGRDPNESRPGQMRRFGGPMAGIGVAAVGGG
GGRGRGFNLLRRSLSDIGGGGPPAKQRDIEGALLRLAGDQRARRDVRHDSDAEDDDDVKK
PALQSSVVATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVCTEKQKR
RSEIEQKLEVQAEVEKKKLESEKRELFEERRAKQTELRLLEQKVELAQLQEEWTSHNNLL
VKFIRTKTRPHIFYRPGKMCSATQKLLDDSTKKLNVVFEERREAFTEHINKMESRPRRQL
NRDQDGNAAATRNDHSAEGKPAGQVDKVTGNKRAARMEEDEEDDEDEDQEEEEEEKEKGV
DGEQGEAREVTGEVEPEEAGDSREGLIEDEAMEFREAGDEVKEGEEKKEVGAEQKDHEAR
PASQAEAGKEQGDSRKTEQDTHSKEGGPADLEREKTDIASPMEVSQQEASGSAPLALPNL
NPGAAAASLPADPQTAAASPASQMASKAEEREPAAILSSELNDSAGPNPAEQMQSGDGSA
DKPQPDTQVPQSGPAAVLQEQKEGGARGRKKAKESKKDRGQSRSSSSSSSGSSSSGSSSS
SSASSRSSSSSSSSTSSSSGRSREAGKRGKRPSGRDKKKEDRSHRKKGGSSGGKEGRKRK
SDEGRSKSARSDRENKDRERKDKRR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagcggtgcggagcttgcaagaacagattgaaaaagccaaagaaggcttgaga
aatgttgatgataatattcgtaaattaacagggcgagatcccaatgaatccagaccgggc
cagatgcgccgcttcggtgggcccatggcaggcatcggagttgcagcagtgggaggagga
ggaggtagaggaagaggatttaacctgctcagacgcagtctctccgacattggcggcggt
ggcccccctgccaagcagagagacatcgagggtgctctgttgaggctggcaggcgaccag
agggccaggagagatgtgcgtcacgacagcgacgccgaggatgacgacgatgtcaaaaag
ccggcgttgcagtcgtcagttgtagctacctccaaagagcgaacacgccgggacctcatt
caagatcagaccatggatgagaagggcaaacagaggaatcggcgcatgttcggcctgctc
atggggaccctgcaaaaatttaaacaggagtctaatgtttgcacagaaaagcaaaagcgg
cgctctgagatcgaacaaaagcttgaggttcaggctgaggttgagaagaagaagttggag
agcgagaagagggagttgtttgaggagaggagagccaagcagactgagctgagactactg
gaacagaaagtggaattggctcagttgcaagaggagtggaccagccacaataacctcctg
gtgaaattcattcgcaccaagaccaggccacacatcttctaccgacctgggaagatgtgc
tccgccacccagaaactcctcgatgactccaccaagaaactcaatgttgtgtttgaagaa
aggcgcgaggcattcacggaacacatcaacaagatggagtcccggccacgtcgacagcta
aaccgcgaccaggacggcaacgccgcagcgacacggaacgaccactcggcggagggtaag
ccagcaggtcaggtagacaaggtgacaggtaacaagagggctgcacgcatggaggaagat
gaggaggatgatgaggatgaggatcaggaagaggaggaggaggagaaggagaaaggggtg
gacggagaacagggggaggcaagagaggtcacaggggaagttgagccagaggaagcaggg
gacagcagggaaggcttaattgaggacgaggccatggagtttagggaagcaggggatgag
gtgaaggaaggtgaggaaaagaaagaggtgggcgctgagcaaaaggatcacgaggcgcgt
ccagcatcacaggcggaggcaggcaaagaacaaggggacagccgtaagacggagcaggat
acacacagtaaagagggcggcccggcagatcttgaaagggaaaagacggacatcgcgtct
ccaatggaagtgagccaacaagaggcgagcggcagcgctccgctcgccctcccaaatctc
aacccgggggccgcggcagcatccttgcccgccgacccccagacggcggcggcctctccc
gcatcccaaatggcctccaaagcagaggagcgggagccggcggccattctttcgtccgag
ctcaacgattccgccggccccaatccggccgagcaaatgcaatccggggacgggtcggcc
gacaagcctcagcccgatacgcaggttccccagagcggccccgccgccgtcctccaggaa
cagaaagaaggtggcgccagggggaggaagaaggccaaggagtcaaagaaagaccgcggt
caaagtcgcagctcctcttcttcctcctctggctcctcttccagcggaagctcttcctct
tcatccgcttcgagccgctcttcttcctcgtcctcctcgtcgacctcctcgtccagcggt
cgtagtcgggaggccggcaagcgtggcaagaggccgtcgggcagggacaagaagaaagag
gacaggagtcatcgcaagaaaggggggagtagtgggggcaaggaagggaggaagagaaag
agcgatgaaggcaggagcaagtcagctcgtagtgatagggagaataaggacagagaaagg
aaggacaaaagacgctaa
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