Syngnathus scovelli (Gulf pipefish): 125981244
Help
Entry
125981244 CDS
T08785
Name
(RefSeq) WD repeat-containing protein 43 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125981244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125981244
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125981244
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
Utp12
WD40_CDC20-Fz
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_Aladin
Beta-prop_VPS8
EIF3I
Beta-prop_WDR19_1st
Beta-prop_ACSF4
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_2nd
WDR90_beta-prop_4th
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_NOL10_N
ASA1
Beta-prop_HPS5
NBCH_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Paf1
Beta-prop_Nup120_160
PQQ_2
Motif
Other DBs
NCBI-GeneID:
125981244
NCBI-ProteinID:
XP_049597150
LinkDB
All DBs
Position
14:complement(14519927..14525313)
Genome browser
AA seq
647 aa
AA seq
DB search
MADGKGSYSLPLPCVFSPKSHQYLAVCAQDGRLRVWNTDSKTLHQEYVPSAHLSATPTCI
HWGPCRTAKEGPQRKRRKSEGVQLEQRADLLAMGTVAGTVLIYSTAKGALHCTLDGGHSG
GVNCVHWHPEDNLLYSGSDDTNIVEWDLQTGKTRSKWKADGAAVTSLCVSPDGKLLLSAG
RIIKMWALDTKELYRKFTGHSTAVTTLRFATAQPSDSSGLYFVSGAAHDRLLSVWHVRED
GKGKNSVASFVLTDEPKHVDLVASKSKEQQAVRLAAVCEDGQLHLFEHFLNGPCKKPQSP
VCTLQMSDTKDTPTPIPLLAAALADESRSVMLAYGNYLQPVTERVDLNTADRHVCLTRNV
QTTLSLSMASAVSKVKTPIVNAKSKVLIPGLPGHQAPVKATAKRKEGTDNKQKSIAERLG
EIDLQSAASAQKGAPCLQTDNFAVLLVQGLESNDSTILNKVFQTRKDTVIKKTVARLPLP
SVLPLVEEITKRLQGHPFTASLMVRWLKAVLMQHTSYLSSLPDVVSQLGVLYHMIESRVK
MFHKLTKLKGKLYLLVTQVETKTESNKAFDVDHTAKLVYEEESSDEEEPAGSEGLVDEDS
DNWEEDEAMEDDKKEQSDHEEDDSDGRTDSKAKGEEKMEHDNESEEE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtaaaggcagctattcgctgccgctaccttgcgtcttttcgcctaaatcc
caccaatacctggcagtgtgcgcccaggatgggaggcttcgagtttggaacacagacagt
aaaacactccaccaggagtacgtgccttcagctcatttgagcgccactccgacatgcata
cattggggaccatgccggactgccaaggagggtcctcaaaggaagaggaggaaatcggag
ggggtgcagctggagcaaagggcagacctgttggcaatgggcacggtggcgggcaccgtc
cttatttacagtacagccaagggagctcttcactgcaccctggatggaggccatagcggg
ggagtgaattgcgttcattggcaccccgaagacaatttattatacagcggctccgatgac
acaaacattgtggaatgggacctgcaaacgggcaagacgcggagcaagtggaaggcagac
ggagccgcggtaaccagtttgtgcgtgagcccggacggtaaactgctgctttcagccgga
cggatcatcaagatgtgggccttggacactaaggagctttataggaaattcaccggccac
tccacggctgtgacgacgctccgctttgccacggcgcagcccagtgacagcagcggtctc
tattttgtatctggcgcggctcacgatcgactgcttagcgtgtggcacgtacgagaagac
ggcaagggcaagaactcggtggcgtcgttcgtactgacggatgagccgaagcacgtcgac
ctcgtcgcgtccaaaagcaaggaacagcaggcggtgaggctggcggcggtgtgcgaagat
ggacagctgcatctctttgagcactttctaaacgggccctgcaagaagccccagtcacct
gtgtgcacgctgcagatgtcggacacaaaggataccccgacgccgatccccctcctcgcc
gccgctctggccgacgagtcccggagtgtgatgctggcttacggcaactatctgcagcct
gtcacagagagagtggacctaaacacagccgacaggcacgtttgcttgacgcggaatgtt
cagaccacgttgtccctttccatggcatctgccgtttccaaggtaaaaaccccaattgtc
aacgccaagagcaaagtgctcattcccggtcttcccggccatcaagccccagtgaaggcg
acggcgaaaagaaaagaaggcacagacaacaaacagaagtcaatagcagagcgtctcggg
gaaattgatctgcagtctgcggcttccgcccaaaagggggcgccctgcttacagacggac
aattttgccgtgctgctggtgcagggccttgagagcaatgacagcaccatcctaaataaa
gtttttcaaactcgtaaagacacggtcatcaagaaaacggtggctcggctacccctccct
tccgttttaccattggtggaagagattaccaagaggctccaagggcaccccttcacggca
tctctgatggtccggtggctcaaagcggtactaatgcagcacacatcatacctgtcttcg
ctgcccgacgtggtttcccagctgggagtgctctaccacatgattgagagcagagtgaag
atgttccacaaactgacaaagttaaaaggaaagctgtatctcctggtgacgcaggtggag
acaaagacagagagcaacaaggcgtttgatgttgaccacacagccaagctggtctatgaa
gaggaatcttcagatgaagaggagcccgctgggtctgaaggccttgtggatgaggactca
gataattgggaggaggacgaggcgatggaagacgacaagaaagagcaaagtgatcacgag
gaagacgattccgacggcaggacggattccaaagcgaaaggggaggaaaagatggagcac
gataatgagagtgaagaagaatga
DBGET
integrated database retrieval system
