Syngnathus scovelli (Gulf pipefish): 125981314
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Entry
125981314 CDS
T08785
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125981314
03041 Spliceosome [BR:
sscv03041
]
125981314
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125981314
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
125981314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
PRP38_assoc
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
125981314
NCBI-ProteinID:
XP_049597245
LinkDB
All DBs
Position
14:7359456..7378830
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AA seq
1337 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPGSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQTPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGQFDFGNEAERVEEAKKEAASSQLPMVSEPMNSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMSIDGQDTLYGQENSVATAQTSCQPQLPEPEIKM
DDTIDNQQQDMDLDEGPDGMEEDNFEGEDTKTVTTRSRTRSRSRSRSPKRRRSRSRSGSR
KRKHRKRSRSRSRDRKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKASQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSCKIGSKI
IKIAWALNKGVRQEYKQFWDVDLGVTYIPWEKVKVDDLDDFAEGGIIDQETVNEEWDTVK
SSEATKDGIIQPLSAETKASNSQSESYNQPVPMMPVQLPVPQAVPGPVGLVPPNFPVNMS
IPPPGYGPPPPFLRPAFNASQPPPGYMPAAQTAAMASAPTSLVPPPVATSQETAKESPFS
SMIATTSSMPGGFMSSAISGANVFNAAGVQSQQHSGDKMPPSAKGLEGTPELSLPGMHNA
VRSGMGLLGMHPSAHPLHQAGMAGQRMPGMLQLDVRPNLLPPGAGARFPLLLQGPGQQAG
GLLDSPLQAQAHVRPPFSQMDPFHRPPPQANDNVAKTEESSSGADEGKDQDYRFPPVEKQ
STGLLRTPPPEHRAPLGGGGGGGRPPLLQTPGTQPARGSLLGRLQALAGFTPDNHWNQSR
GDFDERDGMDRPNPGQNFPNRFDNRPANAAPKNVAGTQPWNRSGGGPAGFESDLDERRSQ
WDRQRDSDERDFDFRREMNGNRPNRERDRDRERGRDLPREHEKDRNNDRERERGNWTPVL
PLPTPLLPTPPLIPNLNLNQGKLLTPLRLNNPIQSRFQSPLLSQAQAKVPLLGQHQLPVP
VQSREVRKASPAAESHSPLPQTPQSQSLPSTQPENKAQTPLPSSLTEARSSPQPETTLLP
KSPPQDSDKACPQPTRSSDTPGRESPLGVTQAVSPPVELTHSLEAQLCPQVETEDVSKEK
TPSPKAQWLNGAEMDNSTAFEPTPDASPEPTESALPESKAEQEQAGPPQDVDIVQSEAME
EAASEPVLDTDTDTEGT
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagccttcaacaacgagttatactcgttgaatgagtacaagccgccc
atctcgaaggccaagatgacccaaatcaccaagtcaggcatcaaggccattaaattctac
aagcatgttgtgcagagtgtagagaagttcatacaaaagtgcaaaccagaatacaaggtc
ccggggttgtatgttatcgactcgattgtgaggcagtcgcgccaccagtttggcacggag
aaggatgtctttgcaccacgcttcagcaagaatatcatcgccacattccagcacctctac
cgttgtccgtcagatgacaagagtaagatagtgcgggtcctgaacttgtggcaaaagaat
gctgtcttcaagagtgacatcatccagccgttgttggacatggctgccgggattcctcct
ccgagcgttactccggtcatgccaggcagcgctgcccccgtcaataacaccacacctggc
acaccagcaacaccagccacacccgccaacatcgttcaaggtcttcctgactgggcttcg
cagattaccaacacagacactgtggcagctgtggcgcaaattttacaaacgcctcagggc
cagcagcttcaacagctcgtacagagcctgcaaatgcagcagcaaaagcctcagccttca
ttgctccaagccttggatgctggtctggttgtgcagctgcaagctctcaccgctcaactc
actgcagccgctactgcaaacagtctcaatcccctcgagcagagggtctcctcttttaac
aagaaactcttggggcagtttgactttggcaatgaggctgagcgtgttgaagaagctaag
aaggaagcggcatcttctcaactgcccatggtgtcggagcccatgaacagctcactcttc
caccaacttgctgagcagctacagcagcagaacctggagcagtttcagaagcaactgctg
gagcaccagcaaaaggcaatgagcatagacgggcaagacactctatatggacaagagaac
tcagttgcaactgctcagacgagctgtcagccacagctacccgagccagaaattaagatg
gatgacaccatagacaaccagcaacaggacatggaccttgatgagggcccagatggaatg
gaagaggataactttgagggagaagacacaaagactgtcacaacccgctccaggacacgc
tcgaggtcacgttctcggtctcccaaaaggagacggtctaggtcccgctccggctctcgg
aagcgtaagcatcgtaagcggtcacgatcacgctccagagatcgtaagagaaagacgtca
cgttcgtactcaagcgaaagacgtgcccgagaacgagaaaaggagcggcagaagaaagga
ctgcctccgatacgatccaagactctaagtgtgtgcagcacaactctttgggttggccaa
gtggacaaaaaggcttctcaacaagacctcacaaacctgtttgaagagtttggccaaata
gagtcaataaatatgatccctccgagaggctgcgcctacatctgtatggtccacagacaa
gacgcctaccgtgcacgccaaaagctcagcacaggttcctgcaaaattggttccaagatc
atcaagattgcttgggccctaaacaaaggagtaagacaagaatacaagcagttttgggat
gtggaccttggagtcacctacataccttgggagaaagttaaggtggatgacttggacgac
tttgccgaaggaggaatcattgatcaggagactgtcaatgaagagtgggacacagttaag
agttcagaggcaaccaaggatggtataatccaaccactaagcgccgagacgaaagcatcc
aacagccagagtgaaagctacaaccagccagtacccatgatgccggtgcagctaccagtg
ccccaggccgttcctggtccagtaggcttggtgcctcctaacttccctgtcaatatgagc
atccccccgccaggttatgggccgcccccacctttcctaaggcccgcatttaatgcctca
caaccacctccaggttatatgccagcagcacagactgcagccatggcctcagcaccaact
tctctagtgccgccccctgtggcaacgagccaggagacggccaaggaatctccgttcagc
tctatgattgcaacgaccagctctatgcctggtggcttcatgtcctccgctatctctgga
gctaatgtatttaatgcggctggagttcaaagtcagcagcactcgggtgacaaaatgccg
ccttctgccaagggtttggaggggacaccggagctttctcttccaggcatgcataatgca
gttcgcagtggaatgggcctccttggcatgcacccctcagcccacccacttcaccaggcg
ggaatggcgggacaaagaatgcctggaatgttgcaactcgacgtgcgtcctaacctcctt
ccgcctggggccggggctcgctttcctctcctcctccagggacctggccaacaggctggt
ggccttcttgacagcccccttcaggctcaagcccatgtcaggcctccattctctcaaatg
gatccatttcacaggccccctccccaggccaatgataatgtagccaagacagaggagtct
tcttcgggggctgatgagggcaaagaccaggactaccgcttccccccagtggagaagcag
agtacaggtctgctgagaacacctccaccagagcaccgggcgccccttggcgggggaggg
ggaggtggcaggccccctttgctgcaaacaccagggactcagccagccagaggcagtcta
cttggccgtctgcaggctcttgccgggtttacccccgataatcactggaaccagtcgagg
ggggacttcgatgaacgagacggcatggatcgtcccaacccggggcagaacttcccgaat
cgctttgacaaccgtcccgctaatgcagctcccaaaaacgttgccgggacacagccttgg
aaccgcagcggtggtggtccagccggtttcgaaagtgacctagatgaacgaagatcgcaa
tgggacaggcaaagagacagcgatgagagagattttgacttccggagggaaatgaatgga
aatcgtccaaaccgcgagcgggatagagaccgggagcgagggcgagaccttccccgggag
cacgagaaagaccgcaataatgaccgagagcgggaacgcggcaattggacacctgttctc
cctctcccaacacctcttcttcctacgccccctctcatccctaatctgaatctaaaccaa
gggaaactgcttacccctctcagattgaacaaccccattcagtcccgattccagtccccc
ctgctatctcaagctcaggccaaagtgcctctgttaggtcagcatcagctgccggttcct
gtccagtcacgagaggtcagaaaagccagcccagcagctgaatcccatagccctttgcct
cagacccctcaatcccaatccctgccctcaacccaacctgagaacaaggctcagaccccg
ttgcccagttcactcactgaggcccgatcatcgccccagccagagaccactctactcccc
aaatcaccaccccaagactcggacaaggcctgtccccagcccaccaggtcctcagacact
ccgggccgagaatctcctttaggcgtcacgcaagctgtcagcccccctgtagagttgacg
cactctctggaggcgcagctatgcccacaggtggagactgaagatgtctcaaaagagaaa
accccttcccctaaagcccagtggctcaatggagctgagatggacaatagcacggcgttc
gagcccacgccggacgcctctcccgagcccaccgagtctgcgcttcctgaaagtaaagcc
gagcaggagcaggctgggcctcctcaggacgtagacattgtacagagtgaggccatggag
gaagctgcgagtgagccagtgctagacactgacacagacactgaggggacataa
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