Syngnathus scovelli (Gulf pipefish): 125981386
Help
Entry
125981386 CDS
T08785
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03022
Basal transcription factors
sscv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125981386 (mnat1)
09124 Replication and repair
03420 Nucleotide excision repair
125981386 (mnat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125981386 (mnat1)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125981386 (mnat1)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125981386 (mnat1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125981386 (mnat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
zf-UDP
TRAF3_RING
zf-C3HC4
zf-RING_2
zf-P11
zf-RING_6
TRAF6_Z2
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
125981386
NCBI-ProteinID:
XP_049597403
LinkDB
All DBs
Position
14:8837576..8863123
Genome browser
AA seq
311 aa
AA seq
DB search
MNDQSCPRCKTTKYRNPSLKLMVNICGHTLCENCVEMLFVRGSSNCVQCDTPLRKSNFRV
QLFEDPTIDKEVEIRKKVLKIYNKRDCDFPSLREYNDYLEQVEDIVFNLTNNVDVEDTKM
RMEQYQRENREIIQKNKAKLTREQEELEELLLQEQQGNEQRRLDVLQEEQRQLLAKKKNK
QALLDELEKSQLPASLLLAQHKARVTKLETQIEQQKQAVKATNHFSTGIQMRQTVSLQAV
PKLEEALYHYNPLHIETYGPPVPELEQLGRLGYLNNVRASMPQDTAGGYSSALACHRAIQ
DAFSGLFPRTG
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaccaaagctgtccgagatgcaaaacaacaaagtacaggaacccttcgctgaag
ttgatggtgaacatttgtggacacacgctatgcgagaactgcgtcgagatgctgttcgtc
cggggctccagcaactgcgtgcagtgcgacacgcccctgaggaagagcaacttccgcgtg
cagctcttcgaggaccccaccatcgacaaggaggtggagatccgcaagaaggtgctgaag
atttacaacaagcgagactgcgacttccccagcctgagagaatataacgactacttggag
caagtggaggacatcgtgtttaaccttacaaacaatgttgatgtggaggacaccaagatg
agaatggagcagtaccagcgggagaaccgggagatcatccagaagaataaagccaagctt
actcgagagcaggaggaactggaggagctgctccttcaagagcagcagggcaatgagcag
cgacgactggatgtgctgcaggaggagcagaggcaactgctggccaaaaagaagaacaag
caggctctgctggatgaactggaaaagtctcagcttcctgcctcactcttacttgcccaa
cacaaggcccgtgttaccaagctggagactcagatcgagcaacagaaacaggcggtcaaa
gccaccaatcacttctcaacaggaattcagatgcgtcaaacggtatctctgcaagctgta
cccaagttagaagaagccctgtaccactacaaccccctccacattgaaacctacggaccg
ccggtaccagaattggagcagctaggaagacttggatacttgaacaacgtgcgggcctcc
atgcctcaggacacagccggtggatatagctcagctttggcgtgtcatcgagcaatccag
gatgccttcagtggcctcttcccccgtactggctga
DBGET
integrated database retrieval system
