Syngnathus scovelli (Gulf pipefish): 125981808
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Entry
125981808 CDS
T08785
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125981808 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125981808 (nfrkb)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
125981808 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
125981808
NCBI-ProteinID:
XP_049597761
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All DBs
Position
15:complement(6949337..6956136)
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AA seq
1265 aa
AA seq
DB search
MDVLTHILTDPLEPKEEEGGQITEECMLGDCRVSLPEELLEDPEIFFSVMSESTWTEVLS
DSQRQHLSQFLPQFPDNNKAEQGNVVDDLFNNRNFHFGNPLHLAQKLFRDGYFNPEVVKY
RQLCAKSQQRRQLYSLQQYYHRLLKQILVSRKELLDFAVHNGLDFPPKRKVQTRSHAEIR
EQKVRRRLRRILKEVKTECGDSNASSDDDDLTLWTPAPQSPSSPSPTVSLRVVPSLSTQD
MKTTEKTQLGEQDLKAMLQNHREKRKRQPDHPDLMTSDIHLSDILSRANIGRKSALPLFE
LSLPKKKIKEERKKKKMRTVKVESEDPCDALTSDVPAAPLANIINSMPDTPLTPLANIKE
EILEEPPCSPVAVEELAVSFFSLLESILRTEHLASTSVLEEKVQMWQMSPASSLNAWFSS
ASCWSDLVLHALQFLAGESKEGVMALPSGFLPFVEFVDETQQWKWIGPIQDAEKDLIALC
QLWLDSKDFVVKTESEELSELTPPMPRVSTDYVVRPSTGDERQLFQIQEQQRYSQPHKAF
TFRMHGFESVVGPVKGVFDKEMSLNKAREHTLLRSNRPPYVTILSLVRDAAARLPNGEGT
RAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRNRSQ
EEFERIHQAQAAAAKARKALQQKPKPASKPKSSSKDAGGKTTGSLEAGQDIGPMSPTAST
PTQNTSGTPKSPLPCTVTTPIKTTVADAIKSNPGVLLVSPPSLPQLGSILPTSQASPVTS
QSLPSQHAARIVSHLQAGSLPQVRVVSTQPALGSLSGSQQAALVHQNPHQIRMPVSVATK
GISQAVVSMPLRSQSASPVQVPNTLTVSTAMVAKAQTVSPGTPANIPASSSAVLQGIASQ
TIKQVSITGQLGAKASGAAGIPLTTTNVRIQGKDVLRLPPSSITTDAKGQTVLRITPDMM
ATLTKSPVATVKLTPDFLGTTAGGCSKSISATLHVTPSHTTVSASASCTGDVHAAKTAPI
SSTLLKAAGDTAIRLMPTLGVTMADQKSRTFSTVSSPDKSGTTIRIMPGLGVIPQKQGQT
ITMTTASCSKPLTVSASGNVMAGAKSITVASGASTSLKLGANTATMRQVPAPVVNTQTGK
LPARITVPLSVLNQPLKSKSVVTTPIVKGSLNTNISSLGRNIILTTMPAGTKLIAGNKPV
SFVTAQQFQQLQQQGQATQVRIQTVQAQQLQQHMAAASAKSVSTVVVTTAPSPKCPPDLP
PAPPQ
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcctgactcacatacttacagaccccctcgagcccaaagaggaagagggtgga
cagatcactgaggaatgcatgctcggagactgcagggtcagcctgcctgaggaactactt
gaagatcccgaaatcttcttctctgtgatgagtgaaagcacatggactgaagtgctctcg
gattcccagcggcaacacctcagtcagtttctgccacaattccccgacaataacaaagca
gagcagggcaacgtcgtcgatgacctgttcaacaacagaaattttcattttggaaatcct
cttcatcttgcacaaaaattattcagagatggttacttcaaccctgaagttgtcaagtac
aggcagttgtgtgccaagtctcagcaaagacgacagttgtactcacttcagcaatattac
cacaggctgctgaaacaaatcctcgtctcccgaaaggagttattagattttgccgttcac
aatggtctggactttccacctaagagaaaggtacagacgaggagtcacgcagaaatacga
gaacaaaaggttagaagaagactgagacgcattttaaaggaggtgaaaactgaatgtgga
gacagtaatgcttcatctgatgatgacgatctaacgttgtggacaccagcaccacagtca
ccgtcctcgccgtcacccaccgtctccctcagagttgtgcccagcctctctacccaagat
atgaagaccactgaaaaaacccaacttggagagcaggacttgaaagccatgctacaaaac
catcgggagaagaggaagcgacaaccagatcatccagacttgatgacctctgacattcac
ctcagtgacatactctccagggcaaatattggtcgcaaatcagccttaccgctttttgag
ctgtctctgccgaagaaaaaaatcaaagaagagagaaagaagaagaaaatgagaacagtc
aaagtggaatcggaggatccctgtgatgctcttacttcagacgtcccagctgcccctctg
gcgaacatcattaactccatgccagacacgccgttgaccccgctggccaacatcaaggag
gaaatcctggaggagcctccgtgcagcccggtggccgtggaagaactagccgtcagcttc
ttcagcttgttggagagcatattgaggacggagcacctggccagcacttcagtgctggag
gagaaagtccaaatgtggcagatgtctcctgcgagctcactcaacgcctggttttcatct
gcttcctgctggtctgacttggtcctccacgccttgcagtttctcgctggagagagtaaa
gaaggtgtcatggcgctccccagcggcttcctgccatttgtggaattcgtcgatgaaaca
cagcagtggaagtggatcggccccattcaggatgcagaaaaggacttaattgcactttgt
caattgtggttagattctaaagattttgtggttaagactgaaagtgaagagctatcagag
ttaacaccccccatgccacgagtttcgactgattacgtggtgagacccagcacgggagat
gaaagacaactcttccaaattcaggaacagcagcgatacagccaaccccacaaagctttc
acgttccgcatgcatggttttgaatcggtcgtggggcccgtcaagggagtgtttgataag
gaaatgtctctcaataaagctcgggagcatacgctgttgcgctccaatcgcccaccttat
gtcaccatcctctctctggttcgtgacgcagcagccaggcttcccaatggagagggaact
cgggcagaaatctgtgaacttctcaaggactcacagtttcttgcccctgacgtcacaagt
gcacaggtgaacacagttgtcagcggtgctctggatagattgcactatgagaaggacccc
tgtgtgaagtacgacattggtcgcaaactgtggatttacctgcaccgcaaccgcagtcaa
gaagagtttgagaggattcaccaggctcaagcggctgccgcaaaagcaagaaaagcactg
cagcagaaaccaaaacctgcgtccaagcctaaatcaagcagtaaagatgcaggaggtaaa
acaacgggatctttggaagcaggacaggatataggtcccatgtcgccgacagcgtctact
ccaacccaaaacacttctggcaccccaaagtcacccttgccctgcacggtcacgacacca
attaagactacagtcgctgatgcaatcaaatccaacccaggcgttctcctagtgtctccc
ccttccttgcctcagctgggctcaatcttacccaccagtcaggccagcccagttacatct
cagtctcttccttcccaacacgcggcccgaatagtgagccacctgcaggcaggctcactc
cctcaggttcgggtcgtctccactcagcccgcactaggttctctgtcaggaagtcagcaa
gctgctttggttcatcagaaccctcatcagatcaggatgccagtgtctgtggcaaccaag
ggtatctcacaggcagttgtgtctatgcctttgaggagccagtctgctagtcctgtacag
gtgcccaacactttgacggtttccacggcaatggtggccaaagctcagaccgtgtcacct
ggcaccccagccaacatccccgcatcgtcgtcggctgtgctgcaaggaatcgccagccaa
accatcaaacaagtgtccatcacaggccagttaggtgcgaaagcctcgggagcagccgga
attccgcttaccaccacaaacgtccgcatccagggtaaagatgtcttgcgccttccgccc
tcctccatcaccacggatgccaaaggccagaccgtactgcggatcacgccggacatgatg
gccacgctcaccaaatcacccgtggcgacagtcaaactcactcccgacttcctgggcacg
accgccggcggctgtagcaagagcatatcggccacgctccacgtcacgccctcgcacacc
actgtgtccgcctccgcgtcctgcacaggggacgtacatgccgccaaaacggcgcctatc
tcttccaccctgctgaaagccgcaggcgacacagccatacgcctgatgcccactttaggc
gttaccatggccgaccagaaatctcgcaccttctccaccgtcagctctccggacaagagc
ggcaccaccatccggatcatgccgggcctcggggtgatcccgcagaagcaaggtcagacc
atcaccatgacaaccgccagctgcagcaagcccctgacggtatccgccagcggtaatgtc
atggctggcgccaagagcatcacagtggcctcgggagcctcgacctctctgaagctgggt
gcaaacacagcaaccatgcgccaggtgcctgctcctgttgtcaacacacagacgggcaag
ttacctgcccgcatcacagttcctttatcagtcctcaaccaaccactgaaaagtaaaagt
gtggtgacgacaccaattgtgaaggggagcctcaacacaaatatcagcagcttgggtagg
aacatcatcctgaccaccatgcctgcgggtaccaagctgattgctgggaacaaaccggtc
agcttcgtcacagcgcaacagttccagcagctccagcagcaaggacaggccacacaggtg
cgaatccagacagtccaggcacagcagctccagcagcacatggcagcagcttccgctaaa
tccgtctccacggtcgtcgtcaccactgcgccttcaccgaaatgtccacccgatctccca
cctgcgcctcctcagtga
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