Syngnathus scovelli (Gulf pipefish): 125981909
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Entry
125981909 CDS
T08785
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125981909 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125981909 (pcf11)
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125981909 (pcf11)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125981909 (pcf11)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125981909 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
125981909
NCBI-ProteinID:
XP_049597933
LinkDB
All DBs
Position
15:5918006..5926538
Genome browser
AA seq
1563 aa
AA seq
DB search
MNCLLLNAYAHDEVGVAIPRSKMDDGAAREVACREYQSSLEDLTFNSKPHINMLTILAEE
NVNFAKDIVAIIEAQISKAPAAEKLPVLYLVDSIVKNVGGEYVAVFAKNLITSFICVFEK
VDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPKFLK
QSEETPPRPTPTQPPPPVIQPSLTQEQRIRQQLLAKQKQLLELQQKKIELELEQTKAQLV
GGFSILPSSPLAASPKPVGQPTPVVRPLIAPQPPSDPKLPTRDPRLNRTGPPIVSRSKEQ
PAGKREVPPAIVTPVFTPEKQAAEKTFHSQKVWTPKKEEKPNIKSPQMIKNVQSKNKHAE
VENLKSADNSKKDPRLKKRPLDKAEDDKVDEQKEKKKFGDKRDELTRVPELPKAYRGRLQ
NGLGNKRESSVSAEKIGGNARTHARKRTHSRSRSRSPSSPKRKGRRSSPKSRTRSTSLSP
SRKAGKSRRAKGDEPLHGKNMRDERPVAKKDQAESRRSKTPVDDRPSKTPADDRNSKTSA
DERRSKIPGDDRRSKTPADDRRSKTLGDDRRSKTPADDRRSKSRDSPRNQDGGSKQAKDA
PSRWRSGWDENKNTSSLKPGDSHDKLGPQRHKTYSTPTRPTTPRTPKHRLSVDANLQIPE
VLNTATKKDLLRMASKSLESGEITQEDFLNMAHKIKNFFQYQEEKQQHPESWDPAANFSG
KKTLMATPPESLDQAQLTYFEHKSKLKKTQVAHRSTGEGWDGLEECEGPGRAPRDLGEAT
TNRPAARILFCTCHSKVVCPLTDERRSLEREESRPPLTPMIEEYNHGKEFPALKSLPGLR
FRRRADPRESSEREWNSPLTERQCEEHKSGYDAPRRYVPSAESRHPDPRHLDGPPHPGAL
VPRNCPSPSALETPLPMFERERLSPLHQKDMADMSPAPRFESPNSEHSDDGPLPSEVPLA
PQSILQGPVLGALLSNIHQLSNSPGHTPPHEGGPPPPRFDAPGHMGPSRAPPPGWYNEPS
HFEGPHQGMPHHHNMPERFNGPHVPQGSLMNTDNMGRFDGPLGPTRFDGPGPGNFENPVQ
CFDNNLGPGPVPMAFQSQQQRPIPFENPGMHLEGSAGPMCFEGPGQPGPRFDMPLFEGQQ
VPPRFAPQINIPMRPMPPPMYDNNLQPAQNFAMAPQAFPEPINPQFHPAPMGFPTQPAAN
FNMLPGPPFSQPGSAPFFNPAVASGNMQQPVNVLNMNQPFLPQNAAPFAQPAAPQLPPAE
NHFGQVDVNDLLSKLISTGIIKGSQPDPTASTTAELSSAAPEAPHVEEEEEEEVEDDFPD
LTGFKLDDMKQRYESVVTKLYSGNQCCLCSMRFTVAQTDLYADHLDWHFRQNHAGKVAGK
KITHRRWYYGLRDWVEFEEIADLEERAKSLFFEKENEEEVQKNQAAAKEKEFQSVKAAKD
QVAELCEICQEPFETYWVEEEEDWFLKNAIRVDDKNFHPSCFEDYKNTSSYMDMTPSPNK
VLSEHPLGSFIKAEEDEVPQSCAVAASIKQEADSEEDEGERDVKTEEKEEPLLTDVQSEE
KRL
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtctgctcctcaatgcatacgctcacgacgaagttggtgtagctatcccccgc
tcgaagatggacgacggcgcggcgagggaagttgcctgccgagagtatcagtcctcgctg
gaagacctcacgttcaacagcaagccacacatcaacatgctgaccattctggccgaggaa
aacgtcaacttcgccaaggatatcgtcgcgataattgaagcacaaataagcaaggcccca
gcagccgagaagcttccagttttgtacttagtggattccatagtgaagaatgttggagga
gagtacgtcgctgtgtttgctaaaaacctaatcacttcatttatatgtgtctttgaaaag
gtggatgagaacaccagaaagagtttgttcaagttacgatcgacatgggatgaagtgttc
cctctgaagaaactgtacgcgcttgatgtgcgggtcaactccgtggatccggcatggcca
atcaagcctctgccgccaacagtcaatgccagcatccacgtcaacccaaagtttttaaaa
cagtctgaggagacccctccacggcctacccccacccaaccacctccgccggtaatccag
cccagcttgacccaagagcagcggatcagacagcagctattggccaagcagaagcagctt
cttgagcttcagcagaagaagattgagctggaactggagcagaccaaagcacagctggtt
ggaggattttctatactaccaagctcccctctcgcggcatccccgaagccagttggccag
cccacccctgtggttcgacccctgatagctccccagcccccaagtgacccaaagttaccc
actagagacccacgtctgaaccgcacagggcccccaattgtctctagaagcaaagagcaa
cctgctgggaaaagggaagtccctcctgccatagtaacccccgttttcacaccagaaaaa
caagcagcagaaaaaacgttccattcacaaaaggtatggactcccaaaaaggaggagaag
cccaacataaagtctcctcagatgattaaaaatgtccagagtaaaaataagcatgctgag
gttgagaacctaaagtctgcagacaactcgaagaaagacccccggttgaagaaacgtccc
ctggacaaggcagaagatgacaaagtggacgagcagaaggagaagaaaaaatttggtgac
aaacgagacgagttgacacgggtgcccgagctgccaaaagcctacagaggaaggctgcag
aacggcctggggaacaagcgtgaaagcagcgtgtctgcggagaagatcggtggcaatgcc
cgaacacacgccaggaaacgcacacactcaaggtccagatcccgctctccctcctcgcca
aagaggaaaggcaggaggtcgtcacccaagagcagaaccaggagcacctccttgtcccca
tcacgcaaggcaggtaaatccaggagggccaagggcgatgagccactgcacggaaagaat
atgcgggatgagcgaccggtggccaagaaggaccaggcggagagcaggcgctccaagact
ccggtggacgatcgtccctccaagactccggcggacgatcgcaattccaagacttcggcg
gatgaacggcggtccaagattccgggggacgaccggcggtccaagactccagcggacgac
cggcggtccaagaccctgggggacgaccgacgctcaaagactcctgcggacgaccggcgg
tccaagtccagagactcaccacggaaccaggacggaggcagcaaacaggccaaagatgct
ccttcacgctggcggagtggctgggatgaaaacaaaaacacttccagtcttaagccagga
gactctcatgacaagcttggaccacagaggcataaaacctacagcactccaacacggccc
accaccccccgtaccccgaaacatcgtctcagcgtggatgccaaccttcagatacccgaa
gtcctcaacaccgcaactaagaaagacctgctcagaatggcaagcaagagcctggagagc
ggtgaaattacgcaggaggacttcctgaacatggctcacaagatcaagaacttcttccag
tatcaggaggagaagcaacagcatccagaaagttgggaccctgccgccaacttttctggc
aagaagacattgatggccacgcctcccgagtccttggaccaggctcagttgacgtacttt
gagcacaagtccaagctaaagaagacacaggtagctcatcgctccaccggggaaggctgg
gacggtctcgaggaatgcgaagggccaggccgggcaccgcgggatttgggtgaggcaacg
accaatcggccagcagccagaatattattttgcacgtgtcactctaaagttgtttgtcca
ttaacagacgagaggagaagcttagagcgcgaagaatcccgacctccgttgaccccaatg
atagaggagtacaaccacggcaaagagttccccgcccttaaatctctgccaggccttcga
ttcaggaggagggctgaccccagagagtccagtgaaagagagtggaactcgcccttgact
gagcgtcaatgcgaggagcacaagagcggctacgacgctccgcggcggtatgtcccgtca
gcagagtctaggcaccccgaccctcggcatctggacggacccccccaccccggcgctctg
gttcccaggaactgtccgagcccatctgctctggaaactccactccccatgtttgagcgt
gaacgcctgtcgccgcttcatcagaaggacatggccgacatgagccccgctccgcgcttt
gagagtccaaacagcgaacactctgatgacgggccgctcccttctgaagttcccctcgcc
cctcaatcgatcctccagggtcctgtgcttggtgcactgttgtctaatattcatcagttg
agtaattcccctggacacacccctccccatgaaggaggccccccacctccccggtttgat
gctcccggacacatgggcccatcaagagcccccccaccaggctggtacaatgagccgtcc
cactttgagggtcctcaccaaggcatgccccatcatcacaacatgccagagaggtttaat
ggcccacacgtaccacagggatcattgatgaacacggacaatatgggccgctttgacggt
cctttgggccccacaaggtttgacggaccaggacctggaaactttgagaatccagtccag
tgctttgacaacaacctggggcccggtcctgtaccaatggccttccagtcgcagcagcag
cgaccaatcccctttgaaaaccccggaatgcatctggaaggttctgctggtccaatgtgt
tttgagggacccggccagccgggaccccgctttgacatgcctctctttgagggccagcag
gttccccccaggtttgcacctcaaatcaacatccccatgcgtcccatgccccctcccatg
tacgacaacaacctccagcccgcgcaaaactttgcaatggccccgcaagcgttcccggag
cccatcaaccctcaattccaccctgcaccgatgggtttccccacgcagcccgcggctaac
ttcaacatgctgcctgggcctccgttcagccagccgggctccgccccattcttcaacccc
gctgttgcttcgggtaacatgcagcagccggtgaacgtgttgaacatgaaccagcctttc
ttgcctcagaacgcagcgccttttgcacagccagcagctccccaattgccccctgcagag
aaccactttggtcaagtcgacgtcaacgacttgctttctaaactcatctccaccggcatc
atcaaagggtcacagcccgacccgacggcctccaccaccgcagagttatcttcagcagca
ccagaggcacctcatgtagaggaggaagaagaggaggaggtcgaggatgatttccccgac
ctcaccggcttcaagctcgacgacatgaaacaacgttatgagagcgtggtgaccaagctg
tactcgggaaaccagtgctgcctgtgcagcatgaggttcaccgttgcgcagaccgacctg
tacgccgaccacctggactggcacttcaggcagaaccatgccggcaaggtggctggcaaa
aagatcacgcaccgccgctggtattatggcctcagggactgggtcgagtttgaggagatc
gccgacttggaggaacgggccaagagcctgttctttgagaaggagaacgaggaggaggtt
cagaagaaccaggcggcggccaaagagaaggagttccagagcgtcaaggcggccaaagac
caagtcgcagagttgtgcgagatctgccaggagccttttgaaacatactgggtggaggaa
gaggaggactggttcctcaaaaacgccatcagggttgatgataagaacttccatccttcc
tgcttcgaggattataaaaatacatcttcgtacatggacatgacgccgtcgcccaacaag
gtgctgagcgaacacccgctcggcagctttataaaggctgaggaagacgaggttcctcag
tcatgcgccgtcgccgcctcgatcaagcaggaagctgattccgaggaggacgaaggagag
cgcgatgtgaagacagaggaaaaagaggagcctcttttaactgacgtgcaatcagaagag
aaaagactgtga
DBGET
integrated database retrieval system
