Syngnathus scovelli (Gulf pipefish): 125981936
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Entry
125981936 CDS
T08785
Symbol
sptbn4a
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04517
IgSF CAM signaling
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125981936 (sptbn4a)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125981936 (sptbn4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125981936 (sptbn4a)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
125981936 (sptbn4a)
Intermediate filaments
Intermediate filament-binding proteins
125981936 (sptbn4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
PH
PH_9
IQ_SEC7_PH
Motif
Other DBs
NCBI-GeneID:
125981936
NCBI-ProteinID:
XP_049597977
LinkDB
All DBs
Position
15:complement(956131..968226)
Genome browser
AA seq
1518 aa
AA seq
DB search
MLMARDTARDEAQKLHRKWLKHQAFMAELARNKEWLAKIEQEGQGLIQEKPELRTVVQQK
LEEIRECWSDLESTTKAKARQLFENNKPEPAVKSYSDLDDQLSHLERQPPQLEQAHHLPT
FNEQLQKFQAMESQFGDIYKDVEELGSLQGVCLPQRALMAGDKEGAEQSGMVETRIVRLI
EPLKERRRILLASKEMHQVAQDLEDEMLWIQERLPLASCKEYGNNLQSVQQHVKKNQTLQ
RELTGRRARVEEVLDRAGIIASLRTPEVEFVREGAGHVRQLWEVLQLELERRCVILDAAL
QAQQYYSEAAKVESWLSGQKLQQANDEKGTDEASTLQLLKTHLALEQTVETYAETVGMLS
QQCQQLLELGHPESEQITKQQSHIDRLYVSLKDMVEHRKVKLEQQYWLYQLNKDVEELEK
WITEREAVASSTDLGQDLEHVTALQEKFTKFASETNSVGQQRMEQVNKMVNEMIDCGHSD
AATIAEWKDGLNESWADLLELMETRRQMLAASHQLHKFFTDCKEVLAQIAGKMKQLPEVR
ACQANITNPATLQRLMHSFEHALQLLVTQVRQLQENAAQLRTIYAGEKAEAIMVKEHEVM
GAWKELLSSCEASRVQVTSVTDKVQFFSVVRENLMWMEGIMGQIGWDEPRDLTALEVMMK
QHHEQKVKIDGRSKTIQQCADLGKILIAAGNPASEEIKEKLDALLAKQKDLVEKWDKHQE
RLQRKHERFQFAQETVRAEAWLKAKEPPITSKQPEGGQTPAQSDEVEQLILRHEAFRKAA
VTWKERFSSLRQLSAAEKKKEEDKKTPLSSRRMFPLSCLTPGGGSSFGSTPSFMRQTVHA
QIEAAPLQTSVEPAAPTPRLSSSLVSYKPVINGSGYHSLEPQGSGKLVNPSYLGMNHQAI
GGGSDSAFSVLTSKCGGQDTSAHHVINNQTSDGAENSGYFGLSAACVGSSGGGGGYAMQS
HPGGGRLGSSGNLAQEQSGGAIPGFLQQPNMGSSGYLTQQNMGSSGYLTQPQNMGSSGYL
GQHPSLGSSGYLAPQPHLGSSGFIAQNYHTSGGGMGSSGYLAQNHYSSGSLGSSGYLAPS
GGIMDPKMAYAWQHLKADFMQPGINHIHKAVNPLLEASRVQREQYGDIPMADTMGPESGL
DLLHGRLQRDPRGSRSDPQMDHLRREREYKLGRQTSSEQEIQARLNELPMIVRQERYRRR
LERQSSSEQEGSGKQRLHQQDSSDLEGSVKDGSDKRSGEKRSTMAEIVEQVQEREAAHAR
GEPYRPPSSLSAPVTRFDGRPRARDRPKPRRRPRPKEPEESRRSRSAPATGAPTTPQPPS
HTAHNEGFLYRKKATSSDLEAQQRSPTSKSWVNVYCVLKEGKLTFYKDARNHNTTYNGEP
SVDLSNCSFDPSLGYKKKKNVFILQVNDGNNLLVFHAKDEEDLKAWTSNITTCIAEHEAM
AKWDKPGTSGMDHDRSERKERSEGDADARSERSELVGEERSEKERSEKGDGSDKLDTSEI
ADKLEGGAGGSSTSGKSK
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgcttatggcccgagacacggcgcgagatgaggctcaaaagctacacaggaagtggctg
aagcaccaggccttcatggcagaactggcccggaacaaggaatggctggccaagatagaa
caggagggccaggggctgatccaggagaagcccgagttgcgcacagtggtgcagcagaag
ctggaagagatcagggagtgctggtctgacttggagagcacaactaaagccaaggctcgg
cagctctttgaaaacaacaagccggagccagcggtgaaaagctactcggacctggacgac
cagctctcccacttggagcgccagcccccccaactcgagcaggcgcatcatctgcccacc
ttcaatgagcagctccagaaattccaggctatggagtctcagtttggtgacatttacaag
gatgttgaggaactggggagcttgcagggcgtttgccttccccagcgagctctgatggcg
ggtgacaaggagggcgcggagcagtcaggcatggtggagacccgcattgttcgccttatt
gaacccctgaaggagagacgccgcatcctgctggcttccaaagagatgcaccaagtggct
caagacctggaagacgagatgctttggattcaagagaggcttccgctggcatcatgtaag
gaatatggaaataatcttcagagtgtgcagcagcacgtcaaaaagaaccagactctccag
agggagctgacagggcggcgagctcgcgttgaggaggttctggaccgagcgggaattatt
gcatcgctccgcactcccgaagtggagtttgtgcgtgaaggggccggccatgtgcggcag
ctttgggaggtgttgcagttggagctggaaaggagatgtgtcattctggatgctgcactc
caggctcaacaatactacagcgaggcagccaaagtggagtcctggttgtcaggtcaaaaa
ctccagcaggccaatgacgaaaaaggcacagacgaggcgagtaccctgcaattgttgaag
actcacctggctctagagcagacggtggaaacgtatgcagagaccgtggggatgctctcg
cagcaatgccagcagctgctcgagctcggacacccagagagtgagcaaatcaccaagcag
cagtcccacatagacagactgtacgtgtctttgaaagacatggtggagcaccggaaggtc
aagctggagcagcagtactggctttatcagctcaacaaggacgtggaggaattagagaaa
tggatcaccgagcgtgaggctgtagcaagttccaccgatcttggccaagacctggagcat
gttacggcacttcaagaaaagtttaccaaatttgcctcggaaacaaacagcgttggtcag
cagcggatggagcaggttaacaaaatggtgaacgaaatgatcgactgcgggcattcggat
gcagcaaccatcgctgaatggaaggatggactgaacgaatcctgggccgacctcctggag
ttgatggagacccgtagacagatgctggccgcatcccaccagctccacaagttcttcact
gactgcaaagaggttttggcacagattgcagggaagatgaagcagctgccagaggtgagg
gcatgccaagccaacatcaccaatccagccaccctgcagagacttatgcactcgtttgag
catgcccttcaactgttagtgacacaggtacgacaactccaggagaacgccgcgcagctg
cgtactatttacgctggcgaaaaggccgaggccattatggtcaaagagcacgaagtgatg
ggagcttggaaggagctgttaagctcttgcgaggccagtcgtgtccaggtcacctccgtg
acagacaaggtgcagttcttctcagtggtgcgcgaaaatctcatgtggatggaaggcatc
atgggccaaattggatgggacgagcccagggatttgaccgcattggaggtgatgatgaaa
caacaccacgagcagaaagttaaaatagacggccgcagcaaaaccatccagcagtgcgcc
gatctcggcaagatcctcatagccgctggcaaccctgcgtcggaggagattaaagagaag
ttggatgcccttctggccaagcagaaggatcttgttgagaagtgggacaaacaccaggaa
cgcttgcaacgcaaacatgagagattccagtttgcccaagagacagtaagggccgaagcc
tggctgaaggcaaaggagcctccaatcacctccaagcagccagaggggggacagacccca
gcccaaagcgacgaggtggagcagctcatccttcgccacgaagccttccgcaaagctgct
gtaacctggaaagaacgtttcagctctctccgccagctttccgcagctgagaagaaaaaa
gaggaagacaaaaagacgccgctgtccagtcgaaggatgttcccgctatcttgcctgact
cccggcggcggttcctcgttcggttcgactccgtcgttcatgaggcagacggtccacgcc
caaatagaagccgcacccttacagaccagcgtggaaccggccgccccgaccccgaggttg
tcctcgtcgctcgtcagctacaagccggtcataaacggatcgggctatcacagtttggag
ccgcagggtagtggaaaattggtgaacccctcatatcttgggatgaaccatcaagccatt
ggaggtgggagtgactctgctttttcagtgctgacttccaagtgtggaggacaagacact
tccgctcaccatgtgataaacaaccaaacaagtgatggtgctgagaactctggctacttc
ggactgtctgcggcttgcgtgggcagctccggcggcggcggcggctatgccatgcaaagc
catccgggcggcgggcgcttaggaagttcggggaacctggctcaggagcaaagcggtgga
gccattcctggcttcctccagcagcccaatatgggaagttccggttacttgacgcaacaa
aatatgggaagctccggttacttgacacaacctcaaaatatggggagttcaggatacttg
ggacaacatccaagtttagggagttcaggatatttggccccgcagccacatttagggagt
tcaggatttatcgctcagaattatcacaccagtggaggaggaatgggtagctcgggctat
ctggcacaaaatcactacagcagcggaagtctgggcagttcgggatacctggcgcctagc
ggtggaatcatggacccgaaaatggcttacgcgtggcaacacttgaaagctgacttcatg
caacccgggatcaatcacatccacaaggctgtcaaccccctcctagaggccagtcgagtc
cagcgggaacagtacggcgatatccccatggcagacaccatgggcccagaatcaggactg
gacctactccacggccgtctccagagggatccccggggcagccgctcagaccctcagatg
gaccacctgagacgagagagggaatacaaactggggagacagacgtccagcgagcaggag
atccaagccaggctgaatgagcttcccatgatcgtgcgccaggaacgctaccggagacgc
ttggagaggcagtcgtctagtgagcaggaggggagcggcaagcagaggctgcaccaacaa
gactccagtgacctggagggttctgttaaagatggctctgacaaacgctcaggggaaaag
agatctacaatggcagaaatcgtagaacaagtccaggagcgagaagcagcccatgccaga
ggagaaccttatcgtcctccgagcagcctctcagctccagtcacacgctttgacggtcgc
cctcgcgctcgagaccgacccaaacccaggaggaggccccgcccgaaagaacccgaggaa
agtcggcgctctcgatcggctccggccaccggcgccccgacgacgccccagccgccgtcg
cacacagcacacaatgaaggattcctgtatcgcaaaaaggccaccagctctgatctggaa
gctcagcagagaagccccaccagcaaatcctgggtgaatgtctattgcgtgctgaaagag
ggcaagctgaccttctacaaggacgccaggaatcacaacacaacatataacggagagcca
tcggttgacctttccaactgctcttttgatccttctttgggatacaagaaaaagaagaac
gtcttcattcttcaagtcaacgatggaaataatttattagtattccatgcaaaagatgag
gaggatctgaaggcttggacttccaacatcaccacctgtatagctgagcacgaggccatg
gccaagtgggacaaacccggcacatcgggcatggaccatgaccgttcggagaggaaggag
aggtccgaaggcgacgccgacgccaggtccgagagatcggagctcgtgggcgaggagcga
tccgaaaaggagaggtcagagaaaggggacggctccgacaagttagacacgtctgaaatc
gctgacaagctggagggcggggcggggggctccagcacatctggaaagagcaaatga
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integrated database retrieval system
