Syngnathus scovelli (Gulf pipefish): 125981944
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Entry
125981944 CDS
T08785
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125981944 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125981944 (ddx46)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125981944 (ddx46)
Spliceosome [BR:
sscv03041
]
Complex A
U2 snRNP components
U2 related factors
125981944 (ddx46)
Complex B
125981944 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
125981944
NCBI-ProteinID:
XP_049597990
LinkDB
All DBs
Position
15:complement(2655245..2661236)
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AA seq
1071 aa
AA seq
DB search
MGRESRYARKHYRKRSTSPRRSGSRSRSRSPDKRSKKEDRDRNRRERSRSRDRRRTRSRS
RSRDRKRARRSRSRERRRSRSRERKRSGSRTRARRSRSASPSKSRKTEEKAKSKEKENID
VVTEKKKIKEEKEEEKVEDQQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKE
LEEMKQGKKWSLEDDEDDDEDTLVPAEGDDEDDEDAEGKGEDKENEPKEEKMDEGEKDPE
AAAAVAEKQDDEDDVDPLDAYMEEVKQEVKKFNMGGVKGSDKKGAMITKVVTVVKTKKGP
QTHKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYEPYRKNF
YVEVPDLARMSNEDVIAYRLELEGITVKGKGCPKPIKTWVQCGVSMKILNALKKQGYEKP
TPIQAQAIPAVMSGRDLIGIAKTGSGKTVAFLLPMFRHIMDQRPLEESEGPIAVIMTPTR
ELALQITKECKKFSKSLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSG
RVTNLRRATYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRIL
SRPLEIQVGGRSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADAL
LKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYN
CPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQVRYAGDIIKALELSGSPIPAELEQLWAS
FKDQQKAEGKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEE
QIESMFNSKKRVKDLMAPGGSGGSSGGSSGSMSGLSGLGPTSAGNIQKLEMAKRLALKIN
AQKNLGAEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEER
QAAEQSETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPK
EGERKIYLAIESANELAVTKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgcgagtcgcggtacgcccgcaaacattataggaaacgctcgacgtctccccgg
cgctccggtagccgctcgaggagccgctctccggacaagcgttccaagaaggaagaccgg
gaccgaaaccggagggagaggtcgcggagccgagacagacgcaggacccgatctcgttcc
cgttcccgagacagaaagcgagccagacggtccaggagcagggaaaggaggagatccaga
agcagggaacgcaagaggtcaggcagcaggacccgagccaggaggtcgcgctcggccagc
cccagcaagagcaggaaaaccgaagaaaaggcaaagagcaaagagaaagaaaatattgat
gttgtgacggaaaagaaaaaaattaaggaggaaaaggaagaggagaaagttgaggatcag
caggactttgaccagaacaagctggaggaggagatgagaaagcggaaggagcgagtggag
aagtggcgcgaggagcagcgcaagaaggccatcgagaacatcggcgagatcaagaaggag
ctggaggagatgaagcagggcaagaagtggagtctcgaagacgacgaagatgacgacgag
gacaccctcgtccccgcagagggggatgacgaagatgacgaggatgctgaaggcaaaggg
gaagacaaggagaacgagcccaaggaggaaaagatggatgaaggcgagaaggatccggag
gctgccgccgctgtcgccgagaagcaggacgacgaggacgacgtggacccgttggacgcc
tacatggaggaggtcaagcaggaagtgaagaagttcaatatgggaggcgtcaaaggaagc
gacaagaagggagcgatgataaccaaagtggtgacggtggtcaaaaccaaaaaagggcct
cagactcacaagaaaaagggcgagctgatggagaacgaccaggacgctatggagtactcg
tcggaggaggaagaagtggacttgcagacggcgctgacgggctttcagaccaagcagagg
aagatcctggaacccgttgaccacggcaagatccaatacgagccctaccgcaagaacttc
tacgtggaggtgcccgatctggcccggatgtccaacgaggacgtgatcgcataccggctg
gaactggagggaattacggtaaaggggaaaggctgccccaagcccattaagacctgggtg
cagtgcggcgtgtccatgaagatcctcaatgccctcaagaagcaaggctacgagaagccc
acccccatccaggcccaggccatccccgccgtcatgtcgggccgagacctcatcggcatc
gccaagacgggtagcggcaaaaccgtcgccttcctcctgcccatgttcagacacatcatg
gaccagaggcctctggaagagtccgaggggcccatcgccgtgatcatgacgcccaccaga
gagctggccctgcagatcaccaaggagtgcaagaagttctccaagtcgctgggcctcagg
gtggtgtgcgtctacggaggcaccggtatcagcgagcagatcgccgaactgaagcgagga
gccgagatcatcgtgtgcacgccgggcagaatgattgacatgttgggcgccaacagcggt
cgcgtcaccaacctgcgcagagcgacgtacgtggtgctggacgaggcggacaggatgttc
gacatgggtttcgagccacaggtcatgcgcatcgtggacaacgttcgcccggaccggcag
acggtgatgttctccgccacattccctcgagccatggaggccctggctcgcaggatccta
tccaggccgctggagatccaggtgggcggacgcagtgtggtctgctcagacgtggagcag
catgtgctggtgattgaggaggacaagaagttcctgaagctgctggagatcctcggccac
tatcaggaaaagggctcggtcatcatcttcgtggacaagcaggagcacgccgacgctctc
ctcaaagacctgatgaaggcttcgtacccctgcatgtccctgcacggaggcatcgaccag
tacgatcgcgacagcatcatcaacgatttcaagaacggcgcctgccgcctgatggtggcc
acctcggtggcggcgcggggcctggacgtcaagcagctcatcctggtggtcaactacaac
tgccccaaccactatgaggactacgtgcacagggccggacgcacgggtcgagcaggcaac
aagggattcgcctacaccttcatcacagaggaccaggtccgatacgccggcgacatcatc
aaagccttggagctgtccggctcccccatcccggccgaattggagcagctgtgggcctcc
ttcaaagaccagcagaaagcggagggcaagagcatcaagagcagtagcggcttctcgggc
aaaggcttcaagttcgacgagacggagcacgcgctggccaatgagaggaagaagctgcag
aaggcggcgctgggactgcaagattctgacgacgaggacggagctctggatattgaggag
caaatcgagagcatgttcaactccaagaagcgcgtcaaggacctgatggcacccggaggg
tcaggcggctcgtcgggcggctcgtcgggctcgatgagcgggctctcggggctgggaccc
acgtctgccggaaacatccagaagctggagatggccaagcgactggcgctcaagatcaac
gcccagaagaacctgggagccgaagctcaggatgtgatgcagcaggccaccaacgccatc
ctgcgcggcggcaccatcatgacgccgtcggtgtcggccaagaccatcgccgagcagctg
gccgagaagatcaacgccaagctcaactacacgccggtggagaagctggaggaggagcgg
caggcggccgagcagtcggagacggtcaagcgctacgaggaggagctggagatcaacgac
ttcccgcagacggccaggtggaaggtgacgtccaaggaagccctgcagaggatcggcgag
tactcggaggccgccatcaccatcagaggaacctacttcccaccgggcaaggagcccaag
gagggagagcgcaagatctacctggccattgaaagtgcaaatgagctggctgtgacaaaa
gccaaaacggagatcacgcgtcttatcaaggaagaactcatcagattacaaaactcctac
cagccaactagtaaaggacgatacaaagtgttgtaa
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