Syngnathus scovelli (Gulf pipefish): 125982007
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Entry
125982007 CDS
T08785
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125982007 (zc3h12b)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
125982007 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Lipoprotein_22
Motif
Other DBs
NCBI-GeneID:
125982007
NCBI-ProteinID:
XP_049598096
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All DBs
Position
15:6421796..6432496
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AA seq
835 aa
AA seq
DB search
MEKHPCREENIDSSRDRHAADEPEDGSSSDSDAEEQLRQKAQVNSSKKWEPLAVVTKPHR
QLCRSPCLDRPSFSQSSTVQDSREDETAAGSAVKAASKKDYQTKMDFALKLGYSGEQVEM
VLSKVGAAALINDILAELVRLGNKVEPESQPCSTAAAASASLSLTPCVKETVSPEVSVEE
ESVDPYDNLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVEWFIEKGHKDITVFVPAWRKEQ
SRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYDSDGIIVSNDNY
RDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPC
PYGKKCTYGHKCKYYHPERVNQPLRSVADELRAFAKLSAVKTMSEGALAKYGTGPAMVTR
DGNSEVKRVAPKRQSDPSIRSVACESPESLSVMRKSETNSVPSLVTALSVPTMQPVKSHA
AGALNTRSASSPVPGSLQFSHSSLEHMSSVQYPPILVTNSHGASVTYSEQFPKYDSVSDH
GYYSLHSDFSNMSMSSMHNVDSFCSMEHEHVVCQRTRSHCAESCLGHSNSDSFPSYGDMY
PSSVDGSLEESMKGQQQSPATGRMQTFGFRHEALTRVQSYGPEEPKQGPRKQPAPHMAPH
IQHVAVGARSSCPGDYPVAQNVLPPLSSQPTRSLGMTRMDSVSDSRLYDSNPMRQRRPPL
CREQHASWDPLPCGNESYGYHSYPLSNSLMPCCERVMVRSMPDKMEQIWNVPWEASAAAE
HQERYVVPEHQYQTYRNLCNIFPAYVVHSVMEKNPHLTDPQQLAAVIVTNLRSCH
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcacccatgcagggaggagaacattgactcaagcagggaccggcatgccgcc
gacgagcccgaggacggcagcagctcggatagtgacgctgaggagcagctgcggcagaag
gctcaggtgaacagcagcaaaaagtgggagcccttggcagtggtgacaaagccccatcgg
cagctgtgtcgttctccgtgcctggaccggcccagtttttcccagagtagcacggtgcaa
gattcccgtgaggatgaaaccgcagcgggatcagccgtcaaagcggccagtaagaaagat
taccagacaaaaatggactttgcgttgaagctgggctactctggagagcaggtggagatg
gtgctcagtaaagtgggggccgctgctctcattaatgacattcttgctgagctggtgaga
ctcgggaacaaagtggagcccgaaagtcaaccttgcagcacggcggcggccgcatcggcg
tcgctgtcgctcacgccgtgcgttaaagagactgttagtcccgaagtgtctgtggaagag
gaatctgtggacccttacgataacctcaggccgattgtcatcgatggatcaaatgtggca
atgagccatggaaacaaagaggttttctcttgccgtggtatccaacttgctgtcgaatgg
ttcatagagaaagggcacaaagacatcactgtgtttgtcccagcatggagaaaagagcag
tccaggcctgatgccctcattacagatcaagaaatcttacgcaagctcgaaaaagagaag
atcctggttttcaccccatctcggagggtccaaggcagaagagtggtgtgctatgacgat
cgcttcatagtgaagctggcttatgattctgatggaattatcgtgtccaacgacaactac
agagacttgcaaaatgaaaaaccagagtggaagaagttcatcgaggaacgactcctaatg
tattcattcgtcaatgacaaatttatgccacctgatgatccactgggaagacatggtccg
agcttggaaaatttcctccgcaagcgtcctgttgtcccagagcataaaaaacaaccatgc
ccctatggcaaaaagtgcacatatggacacaagtgcaaatattatcatccagagcgagtc
aatcagccgctgcggtcggtggctgacgaactgcgggccttcgccaaactctctgcagtc
aagacaatgagcgagggggccttagccaaatacggcaccgggccggcgatggtgaccagg
gacggcaactccgaagtcaaacgcgtggcacccaaacgccagtcggacccgagcatccgc
tcggtggcctgcgagtctccagaaagcctttcggtcatgaggaagtctgagaccaattca
gtgccttcccttgtgaccgctctcagcgtgcccaccatgcagcccgtcaagagccacgcg
gccggggccttgaacacgcgatccgccagcagcccggtgccaggttctttgcagttctcg
cacagttcgctggagcacatgtccagtgtgcagtaccctcccattttggtaaccaacagt
cacggcgcttctgtgacatacagcgagcagttcccaaagtatgactcggtcagcgaccac
ggctattattcactgcacagtgacttctcaaacatgagcatgagcagtatgcacaacgtc
gacagtttctgtagcatggagcacgagcacgtggtgtgccagagaactcgcagccactgc
gccgagtcctgcctcggccactccaacagtgactctttcccctcttatggcgacatgtac
cccagctctgtggatgggagcttggaggagagcatgaagggccagcagcagtctccggca
acggggagaatgcagactttcggttttcggcacgaagcgctcacgagggtgcaaagttac
gggcccgaggagcccaagcagggtccgcggaagcagcctgcccctcatatggctccgcac
atccagcacgtggcggtgggggccaggtcgagctgccccggggactaccccgtcgctcag
aacgtcctcccgccgctgtcctcgcagccgacgcgctccctcggcatgacccgtatggac
agcgtatccgattccaggttgtacgacagcaaccccatgagacagaggagaccgccgctg
tgccgcgagcagcacgcgagctgggaccccctcccctgcggaaacgagtcttacggatac
cactcgtaccctctgagcaacagcctgatgccgtgctgcgagcgggtcatggtccgcagc
atgcctgacaaaatggagcaaatttggaacgtgccgtgggaggcctcagctgcagcggaa
caccaagaacggtatgtcgtcccagagcaccagtatcaaacatatcggaacctttgcaac
atttttcccgcttacgtggtccattcggtgatggagaagaacccccatttgacagacccc
caacaactggcagctgtcattgtcacaaatttgaggtcttgtcactaa
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