Syngnathus scovelli (Gulf pipefish): 125982101
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Entry
125982101 CDS
T08785
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125982101
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sscv01009
]
125982101
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125982101
Protein phosphatases and associated proteins [BR:
sscv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125982101
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Protocadherins
125982101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
PepSY
He_PIG
Motif
Other DBs
NCBI-GeneID:
125982101
NCBI-ProteinID:
XP_049598265
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All DBs
Position
15:8140625..8193997
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AA seq
1189 aa
AA seq
DB search
MDQNLQVMLFGLVMLLCSSAEGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLKDCRSLVRGKPCYLEFEVSVTDLLQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFAIPIATDRDSDRNGVSDYALTAGQDATTL
FGLQVADDRGGKLPQLIVLGNLDREVKDSYDLTIKAVDGGNPQRYSSALLRVVVTDVNDN
SPKFEKSTYEAEVLENSPVGHSVLQVKANDSDMGPNGEIEYTLHQAGDPVPKLLRIDRST
GIIYVKGPLDREEIDSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNPPAVEIRGIGLVT
HSEGIANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRSISDSSSDSKRKY
FLQTTTPLDYERVKDYRVEIVAVDSGNPALSGTNSLKVQVTDVNDNSPIFSPTLFEVEFA
EENQAGEKVLDVIASDADSGTNADLIYNIVADTSIKGLFEIDPNTGEVRARNPLDREHKE
HYEFRVTAADKGSPVHKGTASVIVKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
MDVDKGENAHVHLSVESDGGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGQPPRS
SYVGVTINVLDENDNDPVVTKPSNSSFRLLSPLASPDSHVEMVEAEDLDSGLNAEMVFSI
AGGNPYQLFRISQSSGEITLAKEMAPKYGGLHRLVVKVSDRGKPARHATALVHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDNGFAAQRSNILFGSLAGIAGVVMLILVVVFIRH
RIQRETKSGYQPGKKETKDLYAPKQAPKNAKGKRGRRGKPQKSPKPLGEEEEVSLQKSLK
FNLDAVNDSPRIHLPLTYSPESPDIGRHYRSNSPLPSIQLQAQSPSGSQKHQAVQDLPAT
NTFVGTGGDDNSTGSDQYSDYSYKTSQPKYNKQHPHRRVTFSTANPVQDLQDASQHSYYD
SGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGESEHPENDIRSLPDVAMTGNC
TTECSELGHSDACWMPGHPSPVRRTRNPPKLSTFVPYQERGSLGRLANGSAILGGEEHRS
RLPPSRSAYTSSGHDASQDCPLEEMPLSVTSEFPPTSPPAHTPKREIYL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatttacaagtgatgctgtttggactcgtaatgctgctctgcagctctgct
gaaggcagcattctgtacagggtccaggaggagcagcctcccaacactcttattggtagt
ctggctgcagatcaggggctgccagattcaggccatctatataagctggaggtcggtgcc
ccttatctacgtgttgatggaaagactggagatattttcaccactgagatccccatcgat
agagagacgctgaaagactgtcggtcgcttgttaggggtaagccctgctacctggaattt
gaagtatctgtaacagatctgctacagaatcaaagcccgagactcattgaaggacgcatt
gaggtgcaggacatcaatgacaacacccctcaattcccttcttcggtgctgaccatatcc
gtccctgagaacacgatcatgggagcgctgttcgccatacctatagcaactgacagggac
tcagataggaacggggtgagtgattatgccctgacagcgggacaagatgcaacaacactc
tttggtttacaagtggccgatgacaggggtggcaagctaccacagcttattgttctgggc
aacttagatcgcgaggtaaaggattcttatgacctcaccatcaaggcagtggatggagga
aacccgcagcgctacagcagtgctttgctgcgagtggtcgtcaccgatgtcaatgacaat
tcaccaaagtttgaaaaatcaacgtatgaggcagaagtgttggagaatagtccagtagga
cattctgtgctgcaggtcaaagcaaatgactctgacatgggccccaatggagaaattgaa
tacacacttcatcaagcaggagaccctgtgccaaaactcttacgaattgatcggtccact
ggtatcatctatgtcaaaggaccactggaccgagaggagattgacagcttgtccttctat
gtggtggcaagggataagggtccacaaccaaagagctcaaagacctttgtcaccattgag
gtgactgaccagaatgacaatccaccagctgtagagatacgtggtattggtcttgtgaca
cacagtgaaggaatcgctaacatttcagaagacatgccggtgggaacagctgttgctttg
gtgcaagtctctgacaaggatgagggagagaatgccgtggtcacgtgtgtggttgcaggg
gatgtgcccttccagcttcgttctatcagtgactcatccagtgacagcaaaaggaaatat
ttcctgcaaaccaccactcccctcgactatgaaagggtgaaggattatcgagtggagata
gtggctgtagattctggaaatccagcgctctccggtaccaactcattgaaagtacaggta
actgatgtgaacgataactctccaatattctccccaacgttgtttgaggtagagtttgct
gaagagaaccaagctggagaaaaagttttggatgtgatcgcttcagatgcagacagcggc
acaaatgcagatcttatttataacattgtggcagacacatccatcaagggtctctttgag
atagatccaaataccggggaagtcagagcccggaacccgcttgatcgtgaacacaaagaa
cactatgagtttagggtcaccgcagctgataaaggctcacctgtccataaaggaaccgca
agtgttatagtcaaagtcctcgaccgcaatgacaatgaccccaaattcatgcttagtggc
tacagtttctcagttttagaaaacatgcctcccctcagcccagttggcatggtaacagtc
atggatgttgacaaaggtgaaaatgctcacgttcacctatctgtggagtcagatggagga
aaatttgttgttcaaaatggaactggcaccattctatcaagcatatcttttgatagagaa
aaagagagcagctacactttccgtctaaaagctgtggatggaggacaaccacctcgctct
tcttatgtgggtgtaaccatcaatgtactggatgaaaacgacaatgaccccgttgttaca
aagccctccaattcttccttcagacttttgtcaccccttgcttcccccgatagccatgtg
gagatggtggaagctgaagatttggacagtgggctcaatgcagagatggttttcagcatt
gcgggcggtaacccttaccaattatttcgtatctctcaatccagtggagagattacgcta
gcaaaggaaatggccccaaaatatggtggactacatcgcctggtggttaaagtgagtgat
agagggaagccagcacgtcatgccactgccttggtccatatttatgtcaatgaaaccatt
tcaaatgtcagtttagttgaagctctggttggacacagtctttacaccccgctagaccgg
gatatcgccggtgatcctgacaatggctttgctgcacaacgaagcaacattttgttcgga
agcctcgctggaatagcaggcgtcgttatgctcatcttggtggtagtttttatacgacac
cgcattcaaagagaaacaaagagtggatatcaacccggcaagaaagaaacaaaggactta
tatgcacccaaacaggcaccaaaaaatgccaaagggaagcgaggtaggcgaggaaaacct
caaaaatctcccaaaccacttggggaagaagaggaggtcagcctccaaaaaagcctcaag
ttcaaccttgatgcagtcaatgatagcccaaggatacatctgcccctgacttactcacca
gaaagccctgatataggtcggcactaccgctccaactccccattgccctccattcagctg
caagcacaatctccctcaggctcgcaaaaacatcaggcagtccaggaccttccggctacc
aatacctttgtagggaccggaggagatgacaactctactgggtcagaccaatactctgat
tacagctacaagaccagtcaacccaagtacaacaaacagcatccccatcggagagtgacc
ttctccaccgccaaccctgtccaggacctgcaggatgcctcccagcacagttactatgac
agcggcttagaagaatcagagacacccagcagcaagtcatcgtctggccctcgtatcgga
cccttgaccctgcctgaagatcactatgagcgaaccactccagatggcagcattggcgag
agcgaacaccctgaaaacgacattcgctcactgcctgatgtggcaatgaccggaaactgt
acaactgagtgcagtgaattgggccattcagatgcgtgttggatgcccgggcatccctct
cctgtacgcaggaccaggaaccccccgaaactctccacctttgtgccttaccaggaaaga
gggagtctgggacgcctggcaaatggcagcgccattctgggaggcgaagagcaccggtca
cgccttccaccctctcgcagtgcctatactagcagcggtcacgatgccagtcaggactgc
cccttggaggagatgccgctcagtgtaacatctgagttcccacccacctcgccacctgcc
cacactccgaaaagagaaatctatctgtga
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