Syngnathus scovelli (Gulf pipefish): 125982118
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Entry
125982118 CDS
T08785
Symbol
taf6
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125982118 (taf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125982118 (taf6)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125982118 (taf6)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125982118 (taf6)
Coactivators
SAGA/TFTC/STAGA complex
125982118 (taf6)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125982118 (taf6)
STAGA complex
125982118 (taf6)
TFTC complex
125982118 (taf6)
SAGA complex
125982118 (taf6)
SLIK complex
125982118 (taf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
CENP-S
Bromo_TP
Motif
Other DBs
NCBI-GeneID:
125982118
NCBI-ProteinID:
XP_049598318
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All DBs
Position
15:complement(7710164..7714273)
Genome browser
AA seq
637 aa
AA seq
DB search
MAEERRQKQCSVVLPTESMKAMAESMGVGQLQEDSCTALSEEVSYRIKEITQDALKFMHH
GKRRKLTTSDIDNALKLKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEKEVDLSDIINT
PLPRVPLDVSLKAHWLSIEGIQPSIPENPPPAPKEQQKAESTEPLKVVKPGQEDDGNIPG
KNQGATATDGKGKEKGPIRLKPRSTHELSVEQQLYYKEITEACVGSCEAKRAEALQSIAT
DPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAV
VTCIVSKQLCLRPDVDNHWALRDFAARLMAQSCKTFSTTTNNIQSRITKTFTKSWLDDKT
QWTTRYGCIAGLAELGPDVIKTLILPRLTVEGARIKAVMEGPVISNIDKIGADHVQSLLL
KHCASVIAKIRPPPDSVEQYRIDYGYLAPMLCSHVMKARTQAAMQAQQVNRTTLTITQPR
PTLSVSQSGLSGSTVSRTPSIIKVPSSLALMSPRPGTPSQPSPPATKYIVMGTSAGSAST
QQQVITINSSQSASTVTSTVPSATSTLQPLVKLEQGSGPALAGSRPMQKYIVVSLPSSTS
SMDSKSSVIPTPISTTLEPTGKSDRSESPGASTQSPH
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaaaggcgtcagaagcagtgctctgtagtcctgccaacagagtccatgaag
gcgatggcggagtccatgggagtgggacaattacaggaggacagctgtacagccctaagt
gaagaagtcagctacagaattaaagaaattacacaggatgctcttaaattcatgcatcac
ggaaagagacgtaagctaaccaccagtgacattgataatgccctcaaacttaaaaatgtg
gagcccctgtatggattccagtcgcaagagtttatcccttttcgtttcgcaagtggtggt
ggaagagagcttcatttctatgaggagaaggaagtggaccttagtgatattattaacaca
cccctccccagagttccgctggatgtgtctcttaaagcccactggttaagtattgagggg
attcaaccttctattccagaaaatccaccaccagcaccaaaagaacaacaaaaggctgaa
tccacagaacccctcaaagttgtcaaacctggtcaggaggacgatggtaacattccaggc
aaaaatcagggagcaacggctactgatggtaaaggaaaagagaagggtcccatacggttg
aaacctcgcagcacacatgagctttctgtggaacagcagctctactacaaggagatcact
gaagcatgtgtcggatcttgtgaagccaagagagctgaagccttgcaaagcatcgccact
gatccagggctgtatcagatgctaccaagattcagcacctttatttcagaaggggttcgt
gttaacgtggtgcaaaacaacctggctctgctgatttacctcatgcggatggtgaaagca
ctgatggacaaccccactttatacctggagaaatatctgcacgagctcatcccagccgtg
gtaacgtgtatcgtgagcaagcagttgtgcttgagaccagacgttgacaaccactgggct
ttacgggactttgctgctcgccttatggcgcagagttgcaaaaccttcagcaccactacc
aacaacatccagtctcgcatcaccaagacctttactaagagttggttggatgacaaaacc
cagtggacaacgcggtacggctgcatcgccggactcgccgaactgggtcctgatgtgata
aagacgttgatccttcctcggcttactgtagagggcgctcgcatcaaagcagtgatggaa
ggaccagtgatctcaaacattgataagattggagccgaccatgttcaaagtctcctgctg
aaacactgtgccagtgtcattgccaagattcgacctccacctgacagcgtggaacaatat
cggattgactatggttacctcgcacccatgctgtgctcccatgtaatgaaggctcggacc
caagctgcaatgcaagcccagcaagtcaacagaaccacgttaacaattacacagcctcgt
cctaccctctcagtctcacaaagtggactcagtggatcgacggtgtctcgcactccgagc
atcattaaggttccaagctccctcgccctgatgtcgccaagaccagggaccccatcccag
ccatcaccacctgccactaagtatattgtcatgggaactagcgcagggtccgcttcaact
cagcagcaggtaatcaccatcaactcctcccagtcggcttcgacggttacaagcaccgta
cccagcgctacttcaaccttgcagcccttggtaaaactagaacagggaagtggacctgcg
ttggctggttcacgacccatgcagaagtacattgtggtatcgcttccttcgtccacctct
tccatggacagtaagagctctgtgatcccaacacccatctcaaccacactagaaccgacg
gggaagtcggaccgatcagagtctcccggtgccagcacgcagtcgccacactga
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