Syngnathus scovelli (Gulf pipefish): 125982288
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Entry
125982288 CDS
T08785
Name
(RefSeq) short transient receptor potential channel 4
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125982288
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125982288
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
Ank_5
YVC1_C
BAR_4
ApoC-I
Motif
Other DBs
NCBI-GeneID:
125982288
NCBI-ProteinID:
XP_049598692
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Position
15:3495685..3505116
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AA seq
903 aa
AA seq
DB search
MSQLYYRRSDSSSYRDRIPLRIVRAESALSALEKAYLGAVEKGDYASVKQALQEAEIYFK
ININCIDPLGRTALLIAIENENLEIIELLLSFGVYVGDALLHAIRKEVVGAVELLLNHKK
PSGGVQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQKGVSMPQPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALSSPSLIALSSEDPFLTAFRLSWELQELSKVENEFKSE
YEELSQQCKEFAKDLLDQTRSSRELEMILNYRDDVNLLEEEGNGDLARLKLAIKYNQKEF
VAQPNCQQLLASRWYDEFPGWRRRRWAGKFLTCVFIGLLYPAFALCYLTVPKSRYGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIVTTEQDRQGPAPTTVEWMILPWVLGFIWAEIKQ
MWDGGFQEYVHDWWNLMDFVMNSLYLATISLKIVAYTKYSGSKPRNLWEMWHPTLVAEAV
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YETKTSDDRIKCKGIRCVEQNNAFSTLFETLQSLFWSIFGLISLYVTNVDANHQFTEFVG
ATMFGTYNIISLVVLLNMLIAMMNNSYQHIADHADIEWKFARSKLWMSYFEEGATLPPPF
NIIPSPKSVWYLARWLKARVCPGDGDAHQDTIGTLGRRAAENLRINHQYQEVLRNLVKRY
VAAMIRDAKTEEGLTEDNFKELKQDISSFRYEVMGMMKSGRPVLQGTAGSPPESTLAYPN
ASLKIATCAPPKNKASRFKMAASLLQHVASAARIPEAPNGLPNGAAPFLGGGDAGDFAVF
HKRHPGGGCRHHGYDLRQVGPTELSRKMYSLSEESEEDQPGGTGPDVSSDVGSVAVQEDE
STA
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctgtactaccggcgctcggacagctcgtcgtaccgcgaccgcatccctctg
aggatcgtgcgggccgagtcggcgctgtcggcgttagagaaggcctacctgggagccgtg
gaaaagggcgattatgccagcgtcaagcaggccctgcaggaggcggagatctacttcaag
atcaacatcaactgcatcgacccgctgggccgcacggcgctgctcatcgccatcgagaac
gagaacctggagatcatcgagctgctgctgagctttggcgtctacgtgggcgacgccctg
ctgcacgccatccgcaaggaggtggtgggcgccgtcgagctgctgctcaaccacaagaag
cccagcggcggcgtgcaggttcctcccatcttgttggacaagcagttctctgacttcacg
cccgacatcacacccatcatcctggcggcgcacaccaacaactacgagatcatcaagctt
ctggtgcagaagggcgtttccatgccgcagccgcacgaggtgcgctgcaactgcgtggag
tgtgtgtccagctcagacgtggacagcctgcggcactcgcgctcgcgtctcaacatctac
aaggcgctgtccagtccctcgctcatcgcgctgtccagcgaggaccccttcctcaccgcc
ttcaggctcagctgggagctgcaggagctcagcaaggtggagaacgagttcaaatcggaa
tacgaggagctgtctcagcagtgtaaggagtttgccaaagacttgttggaccaaaccaga
agctccagagaactcgagatgatcctcaactacagagatgacgtcaacctcctggaggaa
gagggcaacggggacctggctagactcaagttggccatcaagtacaaccagaaagagttt
gtcgcgcagcccaactgccagcagctgttagcgtcacgctggtacgacgagttcccgggc
tggaggcggcgccgctgggccggcaagttcctgacgtgtgtcttcatcgggctcctgtac
ccggcgttcgctctgtgctacctcacggtccccaagagccgctacgggctgttcatccgc
aagccttttattaaattcatctgtcacacggcctcctacctgaccttcctcttcctgctg
ctgctggcctcgcagcacatcgtcaccaccgagcaggaccgccaaggcccggcgcccacc
accgtggagtggatgatcctgccctgggtgctgggcttcatctgggccgagatcaagcaa
atgtgggatggaggtttccaggagtacgtccatgactggtggaacctgatggactttgtc
atgaactctctgtacctggccaccatctccctgaaaatcgtcgcctacaccaagtacagc
ggcagtaaaccgaggaacctgtgggagatgtggcatccgacgctggtggccgaggcagtg
ttcgccatcgccaacatcttcagctccctgcgtcttatctcgctcttcacggctaattcc
cacctgggacccttgcagatctcgctaggccgcatgctgctggacatcctcaagttcctc
ttcatctactgcctggtcttgctggctttcgccaacggactgaaccagctttacttctac
tacgaaaccaaaacctcggacgacaggatcaagtgtaaaggcatccggtgcgtggagcag
aacaacgccttctccacgctctttgagaccctgcagtctctcttctggtccatcttcggc
ctgatcagcttgtacgtgaccaacgtggacgccaaccatcagttcaccgagtttgtgggc
gccaccatgttcggcacgtacaacatcatctccctggtggtgctgctcaacatgctcatc
gccatgatgaataactcctaccagcacatcgcggaccacgccgatatcgagtggaagttt
gcccgcagcaagctgtggatgagctactttgaggagggggccacgctgccacctcccttc
aacatcatccccagtcccaagtccgtctggtacctggcccgctggctcaaggcacgagtc
tgcccgggcgacggcgacgcccaccaggacaccatcggcacactcgggagacgagctgcg
gagaacctgagaataaaccatcagtaccaagaggtactgaggaacctggtgaagcgctac
gtggccgccatgatccgagacgccaagacggaggaaggtctgacggaagacaactttaag
gagctgaagcaggacatctccagcttccgctacgaggtgatgggcatgatgaagtcgggg
cgaccggtcctgcagggtaccgccggcagcccacccgagtccaccctggcttaccccaac
gcctccttaaagatagccacttgcgccccacctaagaacaaagccagccgcttcaagatg
gccgcctcccttctccagcatgtggcgtccgccgcccggatccccgaagctcctaacggg
ctccccaacggcgccgcccccttcctgggcggcggtgacgctggagactttgccgtgttc
cacaaacgacaccctggtggaggttgccgccaccacgggtatgatcttcgtcaagtcggg
cccacagaactttccaggaaaatgtattctctatcggaggagtcggaggaggaccaaccg
ggtggaaccggtccggacgtcagtagcgacgtcggtagcgtggcggtgcaggaagacgag
agcacagcctga
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