Syngnathus scovelli (Gulf pipefish): 125982297
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Entry
125982297 CDS
T08785
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03030
DNA replication
sscv03420
Nucleotide excision repair
sscv03430
Mismatch repair
sscv03440
Homologous recombination
sscv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125982297
03420 Nucleotide excision repair
125982297
03430 Mismatch repair
125982297
03440 Homologous recombination
125982297
03460 Fanconi anemia pathway
125982297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125982297
03032 DNA replication proteins [BR:
sscv03032
]
125982297
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125982297
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125982297
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125982297
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125982297
MMR (mismatch excision repair)
125982297
DSBR (double strand breaks repair)
HR (homologous recombination)
125982297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
DUF5088
DUF223
Motif
Other DBs
NCBI-GeneID:
125982297
NCBI-ProteinID:
XP_049598710
LinkDB
All DBs
Position
15:complement(2978964..2983857)
Genome browser
AA seq
736 aa
AA seq
DB search
MSVKLTQGAIESLFNGSVVQSPVLQVINIREYPAGKQGLNRYRLNLSDGKRSLSCFLLAT
HLNHLRESELLEPNCVCVLKKTIFSQLSSRRVVVVLDMGVLQTAAETGGRIGNPAQLTDQ
TPDQQQAEPSTSRSDEIPGPSGCGPSGGGNYAMKTSPMKAPAPWMASPMQASPMKAPGMA
SPMQVSPMKAPGMASPMQASPMKAPGMASPMQASPMKAHGMASPRMASPMKSPGMASPRM
ASPMKSPGMASPMQASPMKAHGMASPRMTSPMTPSPMKGSGMASPSSSPSKSPTRVTPIY
QLHPYLSNWTIRARVINKSDIRNWSNSRREGKVFNFEVVDETEEIKIVAFNEEVDQFFSL
VEQDKVYLISKGTVKLANKKFTSLKNDYEITLSASSRIVPCDDDCGVPNLLFQFVPISQL
ETKDPDAVVDVIGVCEEAEDVSLITTKAGKQLSKRALMLTDSSGKMVMLTLWGDQAEKFN
ASGHPVVAVRGARVSTFGGHSLMVFLNSTLIVNPDIPEAFALRAWYNQVGHALCSQSLTE
GYSTSGDFRTNWKTLRDIKTEQLGHGEKADYFSCVATVVFCRKENCLYRACPEGSCFKKV
HEQDDGRYHCDKCGKDYPNFNYRFMLSVNLADFGDNMWATCFQETAETLLGISAEELGHL
KDTDENAFDKVFEKIYFSTYVFRNRVKLENFNDESRMKVTVMEVLPADQRQHSRRLLNAI
RELASRAPAPPIDDDA
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcaaactcacgcaaggggctattgagtccctgttcaatgggtcagtggtgcaa
agtccagttctgcaggttataaacatccgtgagtacccggcaggcaaacaaggcctcaac
aggtaccgcctgaacctgagcgacggcaagcgcagtttgtcctgcttcctcctggcgacg
cacttgaaccacctgagggaatccgagctcctggagccaaactgcgtgtgcgtgctcaag
aagaccatcttctcccaattgtccagccgtcgtgtcgtggtggtgttggacatgggcgta
ttgcagaccgccgccgagacgggagggaggatcggcaatcctgcacagttaaccgatcaa
accccagaccagcagcaggcagaaccgagcacttctaggtctgatgaaattccaggaccc
tccggatgcggccccagcggtggtggaaactatgccatgaagacttcccccatgaaggca
cctgccccctggatggcgtcccctatgcaggcctcacccatgaaggcgcctgggatggcg
tcccccatgcaggtctcacccatgaaggcgcctgggatggcgtcccccatgcaggcctca
cccatgaaggcacctgggatggcatcccccatgcaggcctcacccatgaaggcgcacggg
atggcgtcccccaggatggcgtcccccatgaagtcgcctgggatggcgtcccccaggatg
gcgtcccccatgaagtcgcctgggatggcgtcccccatgcaggcctcccccatgaaggcg
cacgggatggcatcccccaggatgacctcccccatgactccttcgccaatgaaggggtct
gggatggcgtccccctcgtccagtccctccaagagtcccaccagagtgaccccaatatac
caactccacccgtacctcagcaattggaccatcagagcccgagtgatcaacaagtcggat
atccgaaactggagcaactccagacgggagggcaaggtcttcaacttcgaggttgtggac
gagactgaagaaatcaagattgtggccttcaatgaagaagtggaccagtttttctcactg
gtggagcaagacaaggtctacctgatctccaaaggcacggtgaagttggccaacaagaag
ttcacctcgctgaagaacgactacgagattacgctgagcgccagctcgcgcatcgtgccc
tgtgacgacgactgcggcgtgcccaacctgctcttccaattcgtgcccatctcgcagttg
gagaccaaagatcccgacgccgtcgtcgacgtgatcggtgtgtgcgaggaggccgaggac
gtctccctgatcaccaccaaggccggcaagcagctcagcaagagggcgctgatgttaacc
gactccagcggcaagatggtgatgctcacgctgtggggggaccaggctgagaagtttaac
gcttccggtcacccggtggtggccgtcagaggggctcgcgtgtcgaccttcggcggccac
tcgctgatggtgttcttaaactccacgctgattgtcaaccccgacatccccgaggccttt
gccttgagagcctggtacaaccaagttggccacgccctctgcagtcagtccttgacggag
gggtactccacgagcggtgatttcagaaccaactggaagacactgagggacatcaagaca
gagcagctgggacacggtgaaaaggcggattacttcagctgcgtggcgacggtggtgttt
tgccgcaaggagaactgcctgtaccgggcctgcccggaaggctcctgcttcaagaaagtt
cacgagcaggacgacggacgctaccactgtgataaatgcggcaaggactaccccaacttc
aactaccgttttatgctctctgtgaacctggccgactttggggacaacatgtgggccacg
tgcttccaggagacggccgagaccttgctggggatcagcgccgaggaattgggacatctg
aaggacacggatgagaacgcctttgacaaagttttcgagaaaatctacttcagcacgtac
gtcttcaggaacagagtcaagttggagaatttcaatgacgagtcccgcatgaaggtgacg
gtgatggaggtcctccccgccgaccagcggcagcacagccgtaggctactgaacgccatc
cgcgagctagcaagtcgcgctccagccccgccaattgacgacgacgcctag
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