KEGG   Syngnathus scovelli (Gulf pipefish): 125982326
Entry
125982326         CDS       T08785                                 
Symbol
nle1
Name
(RefSeq) notchless protein homolog 1
  KO
K14855  ribosome assembly protein 4
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sscv03009]
    125982326 (nle1)
Ribosome biogenesis [BR:sscv03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    125982326 (nle1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 DSE1_N Beta-prop_Aladin ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP ASA1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C NBCH_WD40 NLE CFAP251_N Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_IFT140_1st PAC11 Beta-prop_DCAF12 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N Tricorn_2nd Beta-prop_NOL10_N Beta-prop_DCAF4 TRM82_WD Beta-prop_HPS5 WD40_RFWD3 Ge1_WD40 Beta-prop_SPT8 RMC1_N PD40 Beta-prop_RIG_1st Beta-prop_WDR75_2nd Beta-prop_NWD2_C WDR54 Cytochrom_D1 Tenui_PVC2
Other DBs
NCBI-GeneID: 125982326
NCBI-ProteinID: XP_049598768
LinkDB
Position
15:3295060..3298588
AA seq 523 aa
MSPCGQTRALCDHLPLSQHLCTYTHVWTGHIGYKAKGDISLRRRLTMGENVERLLIQFQD
ENGQILGSSFDVPLDITQDKLQLVCNALLQKEEPVPLAFFARGDTEIVSSLGACIKNLGW
ETEQVLPVLYQPQAVFRVRAVTRCTSTLQGHTEAVISTAFSPTGKYLASGSGDTTVRFWD
LMTETPHYTAKGHSHWVLSIAWSPDGKKLASGCKNSQIFLWDPVTGTQMGKTLTGHSKWI
TWLCWEPLHLNAECRYLASSSKDCSVRIWDVVLGRCDKILTGHTHSVTCVKWGGDGLLYT
SSQDRTIKVWRAKDGVQCRTLQGHAHWVNTLALSTDYVLRTGAFEPANATVNPQDLRGSL
EELKDKALQRYNNVRGSNPERLVSGSDDFTLFLWNPAEEKKPLARMTGHSALVNEVLFSP
DTRLLASASFDKSVKIWDGRTGKYLMSLRGHVGSVYQVAWSADSRLLVSGSSDSTLKVWD
VKTGKLNMDLPGHADEVFAVDWSPDGQRVASGGKDKCLRIWRR
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgagtccttgcggccagacacgggcactatgtgaccatctccccctgtcacaacatctt
tgtacatatacacacgtgtggactggacacatcggttacaaagcaaagggggatatttcg
ctcagacggcgtttgacaatgggtgagaacgtggagcggctcctgattcagtttcaggac
gagaatgggcagatactgggttcctcctttgacgtacctctcgacatcactcaggacaaa
ctgcagctggtctgcaatgccttgctgcagaaggaggagccggttccactggcgttcttc
gctcgtggtgacactgagatcgtatccagcctgggcgcctgcattaagaatctgggatgg
gagacggagcaggtgctgccggtgctgtaccagccccaagccgtgttccgggtgcgagcc
gtcacccgttgcaccagcacgctgcaggggcacaccgaagccgtcatctccactgctttc
agtcccaccggcaaatatttggctagcggttccggtgacaccactgtgcgcttttgggac
ttgatgacagagacgccgcattatactgccaaaggtcactcacattgggttctgagcatc
gcctggtcgcctgatggcaagaagcttgcgtcggggtgcaaaaacagtcagatctttctg
tgggatccagtgacaggcacacaaatggggaagaccctgactggacacagcaagtggatc
acttggctttgctgggaaccacttcacctcaacgctgagtgccgctacctagcgagcagc
tccaaagactgctcggtgcgcatctgggacgtggtgctggggcgctgtgacaagatcctg
acgggtcacacgcattcggtcacttgcgtcaagtggggcggcgatgggctgctatacaca
tcgtcgcaggaccgaaccatcaaagtgtggcgggccaaagatggggtccagtgcaggacg
ctgcagggtcacgcccactgggtcaacacgttggctctcagcaccgactacgtgctaagg
accggcgcctttgaaccggccaacgccactgtcaacccacaggacctcagaggatcactg
gaggaacttaaggacaaagccttgcagagatacaacaatgttcggggttccaacccggag
cgcttggtgtcaggctcggacgacttcactttgttcctgtggaatcccgccgaggagaag
aagcctctcgcccgaatgacgggccacagcgccctggtcaacgaggtactcttctccccg
gacacccgcctgctcgcctcggcctccttcgacaagtctgtcaaaatctgggacggtcgc
accgggaagtacttgatgtccctccgcggccacgtgggctccgtgtatcaggtggcgtgg
tcagccgacagccggctgctggtgagcggcagcagcgacagcacgctcaaagtgtgggac
gtcaagaccgggaagctcaacatggatcttccgggacacgccgatgaggtatttgctgtg
gattggagtcccgacggacaacgtgtggcgagcggcggcaaagacaaatgcctcagaata
tggagaaggtag

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