Syngnathus scovelli (Gulf pipefish): 125982331
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Entry
125982331 CDS
T08785
Symbol
dennd4c
Name
(RefSeq) DENN domain-containing protein 4C isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125982331 (dennd4c)
Membrane trafficking [BR:
sscv04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
125982331 (dennd4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR
PPR_long
PPR_3
Papo_T_antigen
Motif
Other DBs
NCBI-GeneID:
125982331
NCBI-ProteinID:
XP_049598781
LinkDB
All DBs
Position
1:29945973..29957357
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AA seq
1781 aa
AA seq
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MEDKGHRVSDYFVVAGLTDTSAPLELDLSEAKWSGPKAPITDLAVINRSAGETVPEGFTC
VDGTPGGLPANLNHGSLKSPELFLCYRRARGKPPLIDVGVLYEGKERLIQGCEVIQATPY
GRCANVNNSSAASQRIFVTFRRAAPVRPQNSLAVTDICVIVGSKGETPPHTFCRVDKNLN
CGMWGSSVFLCYKKSVSASNSITYKAGLIFRYPEEDYESLPLSESVPLFCLPMGAKIECW
APNTRDPLPVFSTFVLTSGSGEKVYGSAVQFYEPYPANLLSEKQQIHLGLLTSVEKKPVP
ERALNANKCICLLSRWPFFESFRKFLMFLYKLSVSGPQPLPMEKHIAHFMHSVSFPSPQR
PRILVQLSAHDNLILSQPVSTPLPLSGADYGTLLMNLGSENCATLLHFVLLESKILLHSL
RPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPSD
VVCVDLDTNTVYLSDEKKHNNWKNLPKKPCKTLLGSLSALHRQLAAVSVRQTGLAAAEDV
TPVEADFTWHKKKTALEMEIQEAFLRFMASVLKGYRCYLKPITQAPSDKATAADSLYDLQ
GFLKSRERAHHKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCVEKVQGEWSEEGRL
LELDESQKSEHTVFVMPPEPPSEGGRDPPPKYSYKGFPRLRLELFERPGELRPAISSRAA
GASLASSPALLAKRTKQEIKLASKMAKRFSSDPQLWARCLFSHCYSLWFICLPAAVHLAR
SKSRAMQQAYNVLLKMRTTEVEVLDEVCYRVVMQLCGIWGLPVMAVRVLVEMKRAGVQPN
AITYGYYNKAALESPWPSRNRGGLFMWTKLRNVLRGVAQFKQALRRRSSPGKGSAGGASL
DRCDGAEEEPRDRHPAPPRAAGSDRATAAAAAASAAEPPGPVDAHASVPSIVRLSTGSSP
ESAEGDSFRRHGKADQAAPVVPDAASLAAADRPQKRREKAFAERSRSFSAQTRAGMLSEK
GVDRLGADARILAAAFSAARSASSPGAASKALFRDLEEEALPEEFQGPVSPAQEESGGGD
GGKLPDKCGGDAKEEESGARPVNLERADVEAGADPLSLLASESPEPASVDGLEPPEPPAV
VSRNLAEEIEMYMSLRSPPSAGGKSEPPPERRCSLPGSPAEAPRRGPASSALARSKTFAA
KSQPPAGPSSTLAPLTKSSQGGSLGSVINSISAIKMDNLLSGPKMDVLKSGMKQAANVAS
KMWVAVATAYSYSDDEEEQGQSGGGFPASLDEHMLPDAEDEPEGGGGDLHLAANGLNRSC
ASIGSDAGRGMRHAHASPGRAGGAPDSCHRASSSSSSSSIFQSYALEVLMSSCSQCRSCQ
ALVYDEEIMAGWTADDSNLNTNCPFCRAAFLPLLHVEFHDLRAVGGFYLNPAASGDSLHS
SGGSGLPTAPGDVKTPGRAALPPEEALAHSSPGTHQRLVPEPAQCDPLGLLASAKRCGGG
TSLTRSNSVGGPLQGLDSSPAPPGHGLSTSSLPGSLREVSDGMAGKKPDPRPVSVPYLSP
LVLRKELETLLENEGDQVIYSHKFLSQHPIIFWNLVWYFRRLDLPSHLPGLVLTSEHCNN
GTQLPLTSLPQDSKQVYVQILWDNINLHQEAGDPLYQLWRTLLEKKGTLAPSDHQETRTL
LNTIVRNIQTNDVYGPINLLIRELKRRPEDGRRQRSIYREILFLSLVALGRENIDVEAFD
REYRLAYDELSAEQLRFLRRMDGPPGASVSCCLKCFGTLFI
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagggccaccgcgtgagcgactactttgtggtggccggcctgacggacacg
tcggcgccgctggagctggacctttccgaagccaagtggagcgggcccaaagctcccatc
accgacctggccgtcatcaacaggtcggcgggcgagaccgtgcccgagggcttcacctgc
gtcgacggcacccccggcggcctgccggccaacctcaaccacggcagcctcaagagcccc
gagctcttcctctgctaccggcgcgctcgcgggaagccgccgctcatcgacgtcggcgtt
ctgtacgagggcaaggagcgcctgatccagggctgcgaggtgatccaggccacgccgtac
ggccgctgcgccaacgtcaacaacagctcggccgcctcgcagcgcatcttcgtcaccttc
cgccgcgccgcgcccgtgcggcctcagaactcgctggccgtcaccgacatctgcgtcatc
gtcggcagcaagggcgagacgccgccgcacaccttctgcagggtggacaagaacctcaac
tgcggcatgtggggctccagtgtctttctgtgttacaagaaatccgtgtcggcgtccaac
tccatcacctacaaagccggcctcatcttccgctatccggaggaggactacgagtctttg
cccctgtccgagtcggttcctctcttctgcttgcccatgggcgccaagatcgaatgttgg
gcgcccaacacccgagaccctctgcccgtcttctccacctttgtgttgaccagcggctcc
ggagaaaaggtgtacggttcggccgtccagttctacgagccctacccggccaacctgctg
agcgagaagcagcagatccacctgggcctgctcaccagcgtggaaaagaagccggtcccc
gagcgggccctcaacgccaacaaatgcatctgcctcctctcccgctggcccttctttgaa
tccttccgcaagttcctcatgttcctctacaagctgtctgtctcagggccgcagccgctg
cccatggaaaagcacatcgcccacttcatgcacagcgtgtcctttccgtccccgcagagg
cctcggatcctggtccaactttcggcgcacgacaacttgatcctctcgcagcccgtttcg
acgcctttacccctcagcggcgccgactacggcaccctcttgatgaacctgggctcggaa
aactgcgccaccttgctgcacttcgtcctgctggagagcaagattctgctgcactcgctc
cggccggcggtgctcaccggagtggccgaggccgtggtggcgatgatcttcccctttcag
tggcagtgcccctacatccccctgtgcccactgtccctggcaggcgtcctcaacgccccg
tgcccctttatcgtgggcgtggactcccgctactttgacctttacgacccgccgtcggac
gtggtctgcgtcgacctggacaccaacaccgtctacttgtccgacgagaagaagcacaac
aactggaagaacctccccaagaagccctgcaagactctgctgggctccctgagcgccttg
caccgccagctggccgcagtttcagtgcgacaaacgggtctggcggcggcggaggacgtg
acgcccgtcgaggccgacttcacttggcacaagaagaagacggccttggagatggaaatc
caggaggcctttctgcgcttcatggcctcggttctgaaaggctaccgctgctacctcaag
cccatcacccaggcgccgtccgacaaggccacggccgccgactccctctacgatctgcaa
ggttttctcaaaagccgagagcgcgctcaccacaagttctactcgcagctcaccaagacc
caaatctttatccgcttcatcgaggagtgcacctttgtcagcgacaaggacacgggtttg
gccttcttcgacgattgcgtggagaaggtgcagggagaatggtcggaggagggccgactc
ttggagctggacgagtcgcagaagagcgagcacaccgtcttcgtgatgccgcccgagccg
ccgtccgagggcggccgcgacccgccccccaaatactcttacaaaggtttcccccggctg
aggctggagctctttgagcgtcccggagagttgcggccggcgatcagcagcagagcggcg
ggcgccagtctcgccagcagcccggcgctcctggccaagcgcacaaagcaggagatcaag
ctggcctccaaaatggccaagcgcttctccagcgaccctcagctgtgggctcgctgcctc
ttcagtcactgctacagcctgtggttcatctgcctgccggccgccgtgcacctggcccgc
tccaagagccgtgccatgcagcaggcctacaacgtgctcttgaaaatgagaaccaccgag
gtggaggtcttggacgaggtgtgttaccgggtggtgatgcagctgtgcggcatttggggt
ctacccgtgatggccgtgcgcgtgttggtggagatgaagagggcgggcgtgcaacccaac
gccatcacctacggctactacaacaaggccgccttggagagcccgtggcccagccgcaac
cgcggcggcctcttcatgtggaccaagcttcgcaacgtcctgcgcggggtggcccagttc
aagcaggccctgcgccgccgctcttcccccggaaagggaagcgcaggaggcgcatctttg
gaccgctgcgacggcgcagaggaggagccgcgtgaccgacatccggcgccacctcgagca
gcaggaagcgaccgcgccacggcggcggcggcggcggcgagcgcagcagagcctcccggt
cccgtcgacgcgcacgcatctgtccccagcatcgtcagattgtccaccgggagcagcccc
gagtcagccgaaggcgactcgttccggcggcacggcaaagcggaccaggcggcgcccgtc
gtccccgacgccgcctcgctcgctgcggccgaccggcctcagaagcggcgcgagaaagcc
ttcgccgagcgcagcaggagcttcagcgcccaaacgagggccggaatgctctcggagaaa
ggcgtggaccggctcggcgccgacgcccgtatcctcgccgcagccttttcggcggcacgg
agcgcgagcagccccggcgccgcgtccaaagcacttttccgggacttggaggaagaagct
ttgcctgaagagtttcagggccccgtttccccggcccaagaagaaagtggcgggggcgat
ggcgggaagctgccagacaaatgcggcggcgacgcaaaggaggaggagtctggggcgcgc
cccgtcaacctggaaagggcggatgtggaggcgggcgccgacccgctttccctcctggcg
tcggagagcccagagccggcctccgtcgacggcctggagccccccgagccgcccgccgtc
gtgtcccgcaacctggctgaggaaattgaaatgtacatgagcctgagaagccccccgagc
gccggcggcaagtccgagccacccccggagcgtaggtgcagccttcccggctccccggcc
gaggcccctcggcgcgggcccgccagctccgccctggctcgctccaagacctttgcggca
aagagccagccccccgccggaccgtcctcgaccctggcgccgctcaccaagtcctcccag
ggaggctcgctgggctcggtcatcaactccatttcggccatcaagatggacaacttgctg
tctggccccaaaatggatgtgctcaagtccggaatgaagcaggcggccaacgtggccagc
aaaatgtgggtggccgtcgccaccgcttactcctactcggacgatgaggaagaacaaggt
caaagcggaggaggtttccccgccagcttggacgagcacatgttgcccgacgcggaggac
gagccggagggaggcggcggcgacctgcatttggcggccaacggcctcaaccggagctgc
gccagcatcggcagcgacgcgggccgagggatgcggcacgcacatgccagccccgggcga
gcgggcggggcccccgactcgtgccaccgcgcctcctcctcgtcctcctcctccagcatc
ttccagagctacgccttggaggtgctgatgtccagctgctcgcagtgtcgctcttgccaa
gcgctggtgtacgacgaggagatcatggcgggctggacggcggacgactccaacctcaac
accaattgccccttctgccgcgccgccttcctgcccctgctgcacgtggagtttcacgac
ctgcgcgccgtcggcggcttctacttgaatcccgctgcgtccggagacagtctgcacagt
tccggcggcagtgggctcccgacggcgcctggcgacgtgaagacgccagggcgcgcggct
ctccctccggaggaggctctggcccacagtagtcccggaacacatcaaagactggttccg
gagccggcgcagtgcgacccgctgggtctcctggcgtcggccaaaagatgcggtggcggc
acgtcgctgacgcgcagcaacagcgtgggcggtccgctgcagggcctggactcctcccct
gcgccgcccggccacggcctctccaccagcagcctccccggcagcctgcgcgaggtttcg
gatggaatggcaggcaaaaagccggacccccgccccgtgtcggtgccgtacctcagtccc
ttggtgctgcgcaaggaactggagacgcttctggagaacgagggagaccaggtgatttac
agccacaagttcctcagccagcatcccatcatcttctggaacctggtgtggtatttccgg
cgcttggacctgcccagccacctccccggcctggtcctgacctccgagcactgtaacaac
ggcacgcagctgcccctgacctcgctgccccaggacagcaagcaagtgtacgttcagatc
ctgtgggacaacatcaacctccaccaagaggccggagatcccctttaccagctttggagg
accttgttggaaaagaaggggaccttggcccccagcgatcaccaggagacgcgcacgctc
ctcaacaccattgtgcgcaacatccagaccaacgacgtctacggccccatcaacctgctg
atccgagagctcaaacgtcgcccggaggacggccggcggcagaggagcatctatagagaa
atattatttctctcccttgtggcgttggggcgagagaacatcgacgtagaggcttttgac
agggagtaccggctggcctacgacgagctcagcgccgagcagctccgcttcctgcgccgc
atggacgggccgcccggcgccagcgtcagctgctgcctcaaatgctttggcaccctcttc
atctga
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integrated database retrieval system
