Syngnathus scovelli (Gulf pipefish): 125982491
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Entry
125982491 CDS
T08785
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125982491 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125982491 (nup98)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125982491 (nup98)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125982491 (nup98)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125982491 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
125982491
NCBI-ProteinID:
XP_049599071
LinkDB
All DBs
Position
15:9801753..9851116
Genome browser
AA seq
1800 aa
AA seq
DB search
MFNKSFGTPFGGGSGGFGTSSTFGQQNAGFGTTGGFGTSAFGATTNTGGLFGTAQNKPGG
LFGSSTFSQPPTSSTSTSFGFGAPSATSSGLFGNTAAGNTAAGGLFSQQSNAFSTSKPTS
FGSFGTGTSSGGLFGSTNTTSNPFGGTASLFGGSGFSATQQPGTTVKFNAPTGNDTMVKA
GVTTNINTKHQCITAMKEYENKSLEELRLEDYQAGRKGTANQMPTATGGLFGGGAAAPAS
GPPASLFGSAASNNNFAFGQNKSTFGQASTGGFSGTTGGLFSQPNQQQAGSLFKPFGQTT
TTQSGGFSFGNSNTMGQASTSTMGLFGNTAASQSGGLFGTAQTSASTGFGAAGGLFGQAG
TGFGSVGAQPSIFGNKAGGFGTTTTSAPSFGTGTGIFGNKPALTLGTGANPSTFGFGTNP
VGGNLFGNKSTAGGLGTGLGNTFGAVGAGTTSLFGNNQSKLGSTLGTMGTFGTGGFNGGT
GTLGFGAPQQPVALTDPTAAAAQQAMLQQQFSVLAYSPYGDSPLFRNPLSDPKKKEERLK
PTNPTAQKALTTPTHYKLTPRPATRVRPKALTSSGGSKSQLFDGLDDDEPSLANGAFVPR
KSIKKLVLKNLNSSQYSSPVGKDADDLASLSAYPLNGHSQTEDDEPRPTPAGDDLEVTHF
YVNPIAKPVPQGRTPCVLQDTICELNMHKAIRNGLELSSENASTSPGGESLREERDDVTL
ESNPPPHPAGIVLRRAGYYTIPSMDELADMVDDDGGDCVVENFTIGRKGYGSIFFPGVVN
VTGLDLDQIVHFRRKEVIVYPDDRNKPAEGEGLNRRAEVTLDGVWPNDKTSCTQIRSPER
LADMNYEGRLEKAARKQGARFLEYRPETGSWVFEVAHFSKYGLQESDEDDDVPLQTDPKK
QKVMMSLPPPRLPQPPPPVQQQMAAQTSAVVIDLASGVAELDSDMADVTQGLPAERAPGH
GDNLGPPDGPGGAAGADISAPGVSVPSHIVSSLGINPHTLQIMKASLLAEDEDESDFCQD
HLKISSDFSPCHVQPGQPSVGPLFQARISSGLLSQPPDSPRGLASLLPWPRALRSFHWAV
PAAASSFMLSPKQAEPLVRTVGVRRLGGPVPLEESIAQGKGNLLMDTGLYMGRSFRVGWG
PGWTLAHCGNSLSFPPAEQLGQPPANTMDFSLRPKPGSTIPLTESAYKVLLEQLVAPGEK
MSEEQSGEVLQRPLEICLKHSTIATDSTCPHIRPRPGAAALHDYADWISELSDERAHADP
LLAYWCEVWTLCEALWGRQPHAEVPEGDYEQQLERRRAFSAWLSHRTARRVEKEVALAGK
GRRTEAVFSYLTGNRISEACRLAQEEGDHRLALLLSQAAGSQYGRNLLALQLADWNRTQS
DGYLTEERLRIFTLLAGKPVWQTSESAVNACSQLDWKRCVAVHLWFMLPPTGSVADALTK
YQDAFRGSCEGGKYACAPLPPYLEEEKRQLLMDHRHKEEEKPLYDVCFHLLKLYSDRHYS
LQQLLEPLSATWERLDFRLSWHLWGVLQALHFSHLSAACQGLLHASYAAQLESAGLWHLA
VLVLLHIPDHAQRERAVRALLSLHCPLQETDESLRRERFLTGRLLVPEHWIHEAKSVRAR
HCGDKHREALHLYRAGDWSRCHRLLVTHLAPDCIINDNHDYLLGFLKGLALPEHSATIRD
WDTAGKVYLDYIQVTCIMRDIGQMESDHGYELERLHAQVTSLCGRIQLLPCGGARGLLAQ
SEMAKCVVNILRVVLSLQRGAGAPPQHLVPHVACLPMPEDYALEELRGLTTSYQRQLVVG
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgttcgggacccccttcggcggaggctcgggggggttcggcacttcg
tccaccttcgggcagcaaaacgcgggctttgggaccacgggggggttcggtacgtctgcg
tttggggcgaccaccaacaccggagggctctttggcaccgcgcagaataaacctggggga
ctgtttggctccagcacattcagccagccgccgacgtcatccaccagcactagttttggc
tttggtgctccaagcgccacgtcctccggcctgtttggtaacacggcggccgggaacacc
gcagctggcgggctcttctcgcagcagagcaatgctttcagcaccagcaagcctacgtcc
ttcggaagcttcgggaccggcacgagcagtggtgggctctttggctccaccaacaccacc
tccaacccttttggaggcaccgcatccctgttcggaggctcgggcttctcggcaacgcag
cagcccggaaccacggtcaagtttaacgctccaacagggaatgacaccatggtgaaagcc
ggcgtgaccaccaacatcaacaccaagcatcagtgcatcaccgccatgaaggagtatgag
aacaaatccctggaggagttgaggctggaggactaccaggcgggacgcaagggcaccgcc
aaccaaatgcctactgccacaggtggcctgtttggcggcggcgccgctgcccctgcgtct
ggcccccccgccagcctgtttggctcggcggcgtccaacaacaactttgcgtttggacag
aacaagagcacctttggtcaagcctcaacgggtggcttcagcggcaccacggggggcctc
tttagccaaccaaaccagcagcaggccggcagcctcttcaagcccttcggtcagaccacc
accacgcagagtggcggcttttccttcggcaactccaacaccatgggccaagccagtacc
agtaccatgggtttgtttggcaacacggctgcgtcacaatcaggcggcttgtttggcact
gcccagacaagcgcctccaccggcttcggcgccgccggcggactctttggccaagccggc
accggctttgggagtgtgggcgctcagcccagcatttttggaaacaaagctggcggcttt
ggcactaccacgacaagtgccccgtcctttggcactggcacaggaatctttggcaacaag
cctgcgctaacgctgggaaccggagccaacccgtcaacatttggctttggcaccaacccc
gtgggaggtaatctctttggcaacaagtcgaccgccggaggccttggaactggactgggg
aacacctttggggcagtgggcgctgggaccacgtctctgtttgggaataaccagagcaaa
ttgggctccactctgggcacgatgggaacgtttgggaccggcggcttcaacggtggcact
ggcacgttgggcttcggcgcgcctcagcagcctgtcgcgctgacggatcccaccgcggcc
gctgctcaacaagccatgctgcagcagcagttcagcgtgctggcgtactctccttatgga
gactcgccgctcttcaggaaccctctgtctgacccaaagaagaaggaagagcgtctgaaa
ccgaccaaccccacggcccagaaagctctgactacacccacgcactacaagctgaccccc
cgaccggccaccagagtgcgtcccaaagctttgacttcatcgggcggttccaagtcgcag
ctttttgacggcttggatgacgacgagccctctctggccaacggagccttcgttcccagg
aagagcatcaagaagctggtgctgaaaaacttgaacagcagccagtacagcagccccgtt
ggcaaagacgcagacgacctcgcctctctgtcggcgtaccctctgaatggacacagccaa
acggaggacgatgagccgaggccaacgccggccggtgatgacctggaggtcactcatttc
tacgtcaaccccatcgcaaagcctgtaccgcagggccgcaccccctgcgtcctgcaggac
accatctgcgagctcaacatgcacaaggccatcaggaacggtctggagttgagcagtgag
aatgcgtcgacatccccaggcggagagtctctgcgagaggagcgagacgatgtcacgctg
gaatccaacccaccacctcaccccgcaggcatcgtgctgaggcgcgcaggctattacacc
atcccctccatggacgagctggctgacatggtggacgacgatggcggcgactgcgtggtg
gaaaatttcaccatcggcaggaaaggttatggctccatcttctttcctggcgtggtcaat
gtgactggactggaccttgaccagatcgttcactttcgacgcaaagaagtcattgtgtac
ccggacgacaggaacaagccggccgagggcgagggcctcaacaggcgggccgaggtgact
ctggacggcgtttggcccaacgacaagacgagctgcacgcaaatccgaagcccagaacgc
ctcgctgacatgaactacgaaggccggctagagaaggcggcacgcaaacagggagcgcgc
ttcctggaatacaggcctgagaccggctcctgggtctttgaggtggctcatttctccaag
tatggcctgcaggagtcggacgaagacgacgatgttccgcttcagaccgaccccaagaag
cagaaagtgatgatgtcacttcctccccccagattgccgcagcctcctccccccgtccag
cagcagatggcggcgcagacctcggcggtcgtcattgacctggcgagcggcgtggccgag
ttggacagcgacatggccgacgtcacgcagggccttccggcggagagagcaccagggcac
ggggacaaccttgggccgccagacgggccggggggcgccgcgggtgccgatatttcagct
cctggcgtctctgttcccagccacattgtgtcctcattgggcatcaacccccacacgctg
cagatcatgaaggcgtctcttttagccgaggatgaagacgaaagcgacttttgtcaggat
cacctgaagatctcctcggacttctcgccgtgtcacgtgcagccgggacaaccctcggtg
ggccctctcttccaggctcgcatttcttctggcctcctgtctcagccccctgattcccct
cgtgggcttgcttcactcctgccgtggcccagagcgctccgctcattccattgggcggta
cccgccgccgcctcctccttcatgctttcccccaagcaggcggaacccctggtgaggaca
gtcggggttcggcgcttgggaggccccgtgccgctggaagagtctatcgcccaaggaaag
ggcaacttgctgatggacaccggtttgtacatgggccgctccttccgcgtaggctggggt
cctggctggacgctggcccactgcggcaattcgttgagcttcccaccggccgagcagctt
ggccaaccgcccgcaaacaccatggacttcagtctccggccaaaacccggcagcaccata
ccgcttacggagagcgcctacaaggtgctcttggagcagctggtggccccgggagagaag
atgagtgaggagcagagcggagaggtactgcagcgccccctggaaatctgtctgaagcac
agcaccatcgccacagactccacttgccctcacatccgcccgcggcccggtgcggcggcg
ctgcacgattacgccgattggatctccgagctgagcgatgagcgggcgcatgcggaccca
ttgctggcctactggtgtgaggtgtggaccctgtgcgaggctctctgggggcggcagccg
cacgccgaggtcccggagggcgactacgaacagcagctggagaggcgccgcgccttctcc
gcctggctgtcccaccgcaccgcccggcgggtggagaaggaagtggcactggcgggcaaa
gggcgccgcacggaggcagtcttcagctatctgacgggaaaccgcatcagtgaggcctgt
cgtctggcgcaggaggagggagaccaccgcctggccctgctgttgtcgcaggccgccggc
tcgcagtacggccgcaacttgttggccctgcagctggccgactggaaccgcacgcaatct
gacggctacctgacggaagaacgtctgcgaatcttcaccctgctcgccggaaagcccgtg
tggcagacgtcagagtcggcagtgaacgcctgctcgcagctggactggaagcgctgtgtg
gccgttcacctctggttcatgctgccgcccaccggctctgtggccgacgccctcactaag
taccaggatgccttcaggggatcatgcgagggaggcaaatatgcttgcgcccccctgcct
ccgtatctggaggaggagaagcggcagctgctgatggaccaccgccacaaagaggaggaa
aagcctctctatgatgtctgcttccacctgctcaagctctacagtgacagacactacagc
ctgcagcagctgctggagcctctgagcgctacgtgggagcgtctggacttccgtctgagt
tggcacctctggggcgtcctgcaggcgctgcatttcagccacctgagcgctgcgtgccag
ggcctgctgcacgctagctatgcggcgcagctggagagcgctggcctctggcacctggcc
gtcctcgttctgctgcacatccccgaccatgcccagcgtgagcgtgcggtgagggccctg
ctgagcctgcattgccccctgcaggagacggacgagtcgctccgccgggagcgcttcctg
accggccggctgctggtccctgagcactggatccacgaggccaagagcgtccgtgcccgc
cactgcggcgacaagcaccgggaggcgctgcacctctatcgagccggcgactggagccgg
tgtcaccggctgctcgtcacacacctggccccagattgcatcatcaacgacaaccacgac
tacctgctggggtttctgaaggggctggcgctgcccgagcacagcgccaccatccgggat
tgggacactgctggcaaggtttacctggactacatccaggtcacctgcatcatgcgggac
attggacagatggagagcgaccacggctacgagctggagcgtctccatgctcaagtgacg
tctctatgcggcaggatccagctcctgccctgcgggggcgctagaggccttttggcacag
tcagagatggccaagtgcgtggtgaacatcctgcgcgtggtgctgagtttgcagcgcggg
gcaggggcaccgccgcagcacctggtgccgcatgttgcctgtctgcccatgcccgaggac
tacgccttggaagagctgcgcggcctcaccacctcctaccagcgccagctcgtcgttgga
tag
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