Syngnathus scovelli (Gulf pipefish): 125982630
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Entry
125982630 CDS
T08785
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc)
KO
K04646
clathrin heavy chain
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04142
Lysosome
sscv04144
Endocytosis
sscv05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125982630 (cltca)
04142 Lysosome
125982630 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125982630 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125982630 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125982630 (cltca)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
125982630 (cltca)
Exosome [BR:
sscv04147
]
Exosomal proteins
Proteins found in most exosomes
125982630 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
TPR_1
Motif
Other DBs
NCBI-GeneID:
125982630
NCBI-ProteinID:
XP_049599436
LinkDB
All DBs
Position
15:complement(5119248..5135206)
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPSNIGFSTLTMESDKFICIREKVGEQTQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDTAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNTEESTLFCFAVRSQAGGKLHIIEVGIPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRLAVRNNLAGA
EELFARKFNNLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQGVPTQAGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVYL
RANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPEQGLQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDVIKSLILVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPDLWASVL
LETNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AVQVLIEHISNLDRAYEFAERCNEPAVWSQLAKAQLQQGLVKEAIDSYIKADDPSAYMEV
VQAADKSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGQEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYKATHFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFT
KVKQLPLVKPYLRSVQNHNNKSVNEALNNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
NHELIEFRRIAAYLFKGNNRWKQSVELCKKDRLYKDAMQYAAESKDTELAEELLSWFLQQ
NKNECFAACLFSCYDLLRPDVVLETSWRHNIMDFSMPYFIQVMREHLTKVDKLETSESLR
KEEEQATETQPIVYGTPQLMLTAGPSVAVPPQQAYGYGYQAPAAPYGQPAAAPGFGYGM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgccaattcgttttcaggagcacctgcagctccaaaatctgggaatc
aacccatccaacataggcttcagcaccctaaccatggagtcggataaattcatctgcatc
cgggagaaagttggcgagcagactcaggtggtgatcattgacatggccgatccaaataca
ccaatccgccggcctatctcagcagacagcgccattatgaatcctgcaagcaaggtcatt
gcactcaaagctgccaaaacccttcagattttcaacattgaaatgaagagcaaaatgaaa
gcgcacaccatgacggatgacgtcaccttttggaagtggatttccctcaatacagttgca
cttgtgactgacacggccgtctatcattggagcatggagggtgactcgcagcccgtcaaa
gtctttgaccgccactccagcctggcaggctgccagattatcaactaccgcactgatgcc
aagcagaagtggcttctgctcattggtatttccgcacagcaaaatcgagtggtgggagcc
atgcagttgtattctgtggataggaaagtttctcagcccattgaaggccacgctgccagc
tttgcccagttcaagatggagggcaatactgaggagtctacacttttctgttttgctgtc
agaagtcaggctggtgggaagttgcacatcattgaagtgggaatcccaccaactggcaac
caaccatttccaaagaaagcagtggatgtcttcttccctccagaggcccagaacgacttc
cctgtcgccatgcagataagctccaagcaagatgtcgttttcctcatcactaaatatggc
tacattcacctgtatgacttggaaacgggcacctgcatctatatgaaccgcatcagtgga
gagaccatctttgtcacagctccccatgaggccacctcaggtatcattggggtcaacaga
aagggacaggtgctgtctgtctgtgtggaggaagaaaacatcataccatacatcaccaat
gtgctgcagaatccagatctggctctacggttggccgtccgcaacaacctcgctggtgcc
gaagagctctttgcccgcaaattcaacaacctgtttgcggctggcaactactccgaagct
gctaaggtggctgccaacgcaccaaagggtattttgcgaaccccggacaccatccgccgc
ttccaaggcgtgcccactcaagcaggacagacttctcctctgctgcagtactttgggatc
ttgttggaccagggccagcttaacaaatttgaatccctggagctttgcaggcctgttctc
cagcagggaagaaagcagcttttggaaaagtggctcaaggaagacaagttggagtgctct
gaggagcttggggacctggtgaaagcagtggatcccaccttggcacttagtgtctacctt
agggccaacgttcctaacaaggtcattcagtgttttgcggagactggccagttccccaag
attgtcctttatgccaaaaaggtgggctacactccagactggatatttcttcttaggaac
gtcatgcggatcaacccagaacaaggcctacagtttgcccagatgctggtgcaggatgaa
gagcccctggctgacatcacacagatcgtggacgtgttcatggaatacaatctaatccag
cagtgcacctcattcctgctggatgcccttaagaacaacagaccatcagagggacctctg
cagacccgcctgctggagatgaacctcatgcatgcccctcaggttgctgatgctatcctg
ggcaaccaaatgttcaccaactatgaccgagcacacattgcccaactttgtgagaaggcc
ggactgctgcaaagggcattggagcactacacggacctgtatgacattaagcgggctgtg
gtgcacacacaccttctcaaccctgagtggctggtgaacttctttggctcactgtctgtg
gaggactctttggaatgcctcagggccatgctgtcagccaacatacgccagaatctgcag
atatgcgtgcaggtggcctccaagtaccacgagcaacttaccacacagtctctcacagag
ctctttgaatctttcaagagctttgaaggtctcttctactttttgggctccattgtcaac
ttcagccaagaccccgaggttcacttcaagtacatccaggctgcttgcaagacaggccag
atcaaagaagtggagcgcatctgtcgagagagcaactgttacgaccctgagcgtgtcaag
aatttcctgaaggaagcaaaattgaccgaccagcttcccctcatcatcgtttgcgaccgt
tttgactttgtccacgacttggtcctgtacttgtaccgcaacaacctgcagaagtacatt
gagatctatgttcagaaggtaaacccaagtcgtctgcctgtggttgtcgggggtctcttg
gatgtggactgctcagaagatgtcattaagagcctgattctggtagtcaggggacagttt
tcaactgatgaacttgtggctgaggtggaaaagagaaacagactgaagctgctgctgcca
tggctggagtctcgcatccacgagggctgtgaggagccagctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagaacgcttcctgagggaaaacccattctac
gatagccgcgtggtgggcaagtactgcgagaagcgagacccccacctagcctgtgtggcc
tacgagagggggcagtgtgaccaggagttgatcaatgtctgcaatgagaactcgctgttc
aagagcttatctcgttacctggtgcgtcgcaaggatcctgatctctgggccagcgtgctg
ctggaaacaaacccttaccgacgaccacttatcgaccaggtggtgcagacagcactgtca
gagacccaggacccagaagaggtgtcggtcacagtcaaggccttcatgactgctgacttg
cccaacgaactcattgagctactggagaagattgtgttggacaactctgttttcagtgaa
cacagaaatctgcagaatctgctgatcttgaccgcgatcaaagctgaccgcacccgtgtg
atggagtacatcaacagacttgacaactacgacgctcccgacatcgccaacatcgccatc
agcaacgaactctttgaggaggcctttgccatcttcaaaaagtttgacgtcaacacatcg
gccgtgcaggtgctgattgaacacattagcaacctggaccgggcctacgagttcgccgag
cgctgcaatgaacctgcagtgtggagccagctggccaaggctcaactccaacagggtctc
gtcaaagaggccatagactcctacatcaaagccgatgacccctctgcatacatggaggtc
gtccaggctgctgataagagcggcaattgggaggacttagtcaaattcctccaaatggcc
cgtaagaaggcccgtgagtcctatgtggagacagagctgatctttgctttggccaagacc
aaccgcctagccgaattggaagagttcatcaacggacccaacaatgctcacattcagcag
gtcggcgaccgctgctacgacgagaagatgtacgaggctgccaagttgttatacaacaac
gtctccaactttggtcgactggcctctaccctcgtgcacctgggggaataccaggctgcc
gtcgatggcgcccgcaaagccaacagcacccgtacttggaaggaagtctgctttgcctgc
gtagatggacaggaattccgactggctcagatgtgcggcctccacattgtggtgcatgcc
gatgaactcgaagagctgatcaattactaccaagaccgcggttacttcgaggagctgatc
accatgctggaggcagctctgggcctggagcgcgcacatatgggcatgttcaccgagctg
gccatcctttactccaagttcaaaccccagaagatgagggagcacctggagctgttctgg
tcaagagtgaacatccccaaggtcctgagagcagcggaacaagcacacctgtgggccgag
ctggttttcctttacgacaagtatgaggagtttgacaacgctatcatcaccatgatgaac
cacccgacagatgcttggaaggaaggacagttcaaagatatcatcactaaggtggccaat
gtggaactgtactacaaagccacccatttctatttggagttcaagcccctgttattgaat
gatcttctcatagtgctgtctccaagactggaccactctcgtgccgtcaacttctttacc
aaggtgaaacagctgcctcttgttaagccctacttgcgctcagtgcagaaccacaacaac
aagtcagtcaatgaagcacttaacaacctctttatcacagaagaggactatcaggctttg
aggacatcaatagacgcctacgacaactttgacaacatttcgcttgcgcagcgtttggaa
aaccacgagctgattgagttccgaagaattgccgcgtatcttttcaagggcaacaaccgc
tggaaacagagtgtggagctctgtaagaaggacaggctttacaaggatgccatgcagtac
gcagcagagtcgaaggacacggagctggccgaggagctgctgtcctggttcctgcagcag
aacaagaatgaatgttttgcggcgtgcttgttctcctgctacgacctgctgcggcctgat
gtggtgctcgagacctcctggaggcacaacatcatggacttttctatgccatatttcatt
caggtcatgagagaacacctcactaaggtggacaagctcgaaacctcagaatcactaaga
aaagaagaggaacaagcaacagagacgcaacccatcgtctatggcacaccacagctgatg
ctgacagcaggccccagcgtagctgtgcccccccagcaagcatacggctacggctaccag
gcgcccgctgccccttacggtcagcccgccgccgcgccaggatttggctacggcatgtaa
DBGET
integrated database retrieval system
