Syngnathus scovelli (Gulf pipefish): 125982646
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Entry
125982646 CDS
T08785
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1 isoform X3
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125982646 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125982646 (trpv1)
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125982646 (trpv1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ion_trans
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
125982646
NCBI-ProteinID:
XP_049599479
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Position
15:complement(4085631..4091588)
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AA seq
766 aa
AA seq
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MKKSEKDTFSLETDDRTEDEKCRHKAPKQKAPKAPMDTDYQEEKEETKPQIRINLGFDKG
IRGVDQDNTKRDSRTFDIDRLFEAAASGDVTRLEGLYQYLHQNLKKLSDSLYKSYGKTAL
MKALLHLQDGKNPNVELLLDISERIGDINEFVNAKYTDDYYKGQTALHIAIERRSLSYVK
LLLSKGADVHAKASGKFFRPHKGPNFYFGELPLSLAACTNQPDMVEFLLDNEYQQANPNT
PDSHGNTVLHALVVVADNTKENTDLFIASMYDRILTTTARLKPKLNLEVTENKNGLTPLK
LAAKTGKSGLFGHILKREFQECHTKHLSRKFTEWVYGPVQSSLYDLASVDSADKKSVLEI
LVYGSDIPNRHEMLQTEPLHQLLEDKWKRFAGFMFGLNFLVYFVYLFIFTAVAYNKKDGK
TPFPLEHDTSGYLYLCGQLLITLANVYFFVMGLLDLKRKRPKLQTLLIDGYYDILFFVQA
ILFLVAAGLYVCGRQEYLGFLVLCLALSWVNMLYFARGSKHMGIYSVMIQKMILSDILRF
LFVYVVFLFGFSAAVVTLLIEPPVRNTTRKGRLFGPSSPESECIKPTFRNISYTTLQLFK
FTIGMGDMEFTEQYQYKEVFYVLLIFYIILTYILLLNMLIALMNRTVEKITMESTSIWKL
QRAITILDMERKLPLFVRKRLRCGVDKNLGTPSEQDHRRCFRVEEVNWNKWNVYLGIIQE
EPGNYHRRRRLTSDGQTIQSHGGRWRDLLDKSRRVPQSTEMCNFSP
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtcagagaaagacactttctctctagaaactgacgacaggacggaggacgag
aaatgtcgacacaaagcaccaaaacaaaaggcacccaaagcccccatggacaccgactac
caggaggaaaaggaagaaaccaaacctcaaatacgaatcaacctcggttttgacaaaggc
atccgaggtgtcgatcaggacaacaccaagagagacagtcggacgtttgacatcgacagg
ctgtttgaagcggcggctagcggtgatgtcaccagattggaaggactatatcagtacctg
catcaaaacctgaagaaactctctgactctctgtataagtcgtatggtaaaactgccctg
atgaaggcccttctgcatctccaggacggcaagaaccccaatgttgaattactattggac
atctcagaaaggatcggcgacattaacgaatttgttaatgcaaaatacaccgacgattac
tataaaggacagacggcgctacacatcgcaattgagcggaggagtttgagctacgtcaaa
cttttgctcagtaaaggagccgacgtccacgccaaagcctctgggaaattcttccggcca
cataaaggccccaatttctactttggtgagcttcctctctccctggcagcatgcacgaac
cagcctgacatggtcgagttcctcttagacaacgagtatcagcaggccaacccaaacacg
cccgactctcatggcaacacggtgctgcacgccttggtggtggtggccgacaacaccaag
gagaacactgatttattcatcgcgagcatgtacgatcgcatcctgaccaccacggctcgg
ctgaagcccaaactcaacttggaggtgactgaaaacaaaaacggcctgacgcctctcaaa
ctggctgccaagactggaaaaagtgggcttttcggacacatcctgaagcgtgagttccag
gagtgccacaccaagcatttgtctcgtaaattcaccgagtgggtttacgggccagtccag
agctccttatacgacttggcctcagtggactctgcggacaaaaagtctgtcctggaaata
ctggtctatggcagtgacatccctaaccgccatgaaatgctccagacagaacctctgcac
caactgctggaggacaagtggaagaggtttgcaggcttcatgtttggtctcaacttcctg
gtctactttgtgtacctgtttatcttcactgcggtggcctacaataaaaaggatggaaag
acaccgttccctctagagcacgacacttcaggttacctgtatctttgcgggcagctccta
ataacattggcaaacgtctatttctttgtcatggggttattagatctgaagaggaaacga
ccaaagctgcagaccttgctgattgatggatattacgatattcttttctttgtgcaggct
atcctcttcctggtcgcagccggtctctacgtctgtgggagacaagagtacttgggcttc
ctggtgctgtgtcttgcgctcagctgggtcaacatgctctactttgccaggggcagcaaa
cacatgggcatctacagcgtcatgatacagaagatgatactcagcgatatcctgcgcttc
ctgtttgtctatgttgtcttcctgtttggattctcagcagctgtggtcacactgctcatt
gagcctcctgtgcggaacaccaccagaaagggtcgcctcttcggaccgtcctcccccgag
tccgagtgcatcaagcccaccttccgaaatatctcctacactacgctgcagctcttcaag
tttaccatcggcatgggtgacatggagttcaccgagcagtaccagtacaaggaggtcttc
tacgttctgctcattttctacatcattctcacttacatcctgctgttgaacatgctcatc
gccctgatgaaccgcaccgtggagaagatcaccatggagagcacgagcatctggaagcta
cagagggccatcaccatcctggacatggagagaaagttgccattatttgtgaggaagagg
cttcgctgtggggtggacaaaaatttgggcacaccttctgaacaagatcaccgtcgatgt
tttagagtggaggaagtcaactggaacaaatggaacgtctacttgggcataatccaggag
gagcccggtaactatcatcgaaggagacgactgacgtcggacggccagacgattcagtcg
cacggggggcgctggagagacttacttgacaagagcaggagagtaccacagtccacggag
atgtgcaacttttcaccgtga
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