Syngnathus scovelli (Gulf pipefish): 125982743
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Entry
125982743 CDS
T08785
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03440
Homologous recombination
sscv03450
Non-homologous end-joining
sscv04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125982743 (rad50)
03450 Non-homologous end-joining
125982743 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
125982743 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sscv03032
]
125982743 (rad50)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125982743 (rad50)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
125982743 (rad50)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
125982743 (rad50)
BRCA1-C complex
125982743 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
125982743 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
AAA_29
zf-met
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
125982743
NCBI-ProteinID:
XP_049599688
LinkDB
All DBs
Position
15:complement(2024288..2033540)
Genome browser
AA seq
1311 aa
AA seq
DB search
MSKIDKMSIMGVRSFGIEDKDKQVIEFFTPLTVLVGSNGAGKTTIIECLRYATSGDLPPG
SKGIAFVHDPKEAHETDVRAQIRLLFSDVNGDKIAIQRSMSCTQKTKNYTFKSLEQVITR
LKDGEKVSLSSKCGELDREMISALGVSKPVLNNVIFCHQDDSNWPLSEGKSLKEKFDSIF
AATKYIKALETMRQLRIKQSNTVKECQVELHFLKQNKEKAQQIRELVAYKEDQLMASRDR
VQMLESQIEPLENQLADIDLKLGKVMKLDNDIKVLDSRKKQMEEDNKELEETMEKMFQGS
TEQLQEAYLNHQRTVREKESRLKDCQKQLEQADRECQRLNRQKSELLVERGRLQVESDCH
TQNIKNRDTQVRLLSSQLEMEGYDRPPFTTLQLQSFHRHVTQRLEQERMKVAQVMADMQE
KEQQKQQSIDDIRDKKTGLERIIELKKDMQLKKQLELQNVHTELQRLEGSSGRMHELESE
LAKAEHELQSALETSNVEGLKVEVEALQREKAELDRTQRQLDQEMAVLNMHTTARTQMDM
LTKDKKAKEEQVRKIKSRHSDELVALLGHFPNKRELEDWLYAKSKEINRTRDKLAKLNKD
LASSEQNKSHIAAELRKKEQQLTNDEEKFFNVCGSQDLEQDLSKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSEPDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERRRDEMVTLRPVRQSIVQLQENELPELRNRLQSVNRDIERLKRDVEEQETLLDALMS
EEETVKACQQDIALMDRFLMDLKEVEVKIAQNAAKLQGVDLTRTVQQVSQEKQETQLKLD
TTSSRMDLKRKLIQDQQDRIQMLKSCVNETKAEKLQLSSDMQKQQQLEEQRADFSAENQT
LTRDIREAKEQLSPLISTLHKMQQEKEEMMGRRRQKQEEGQEKINTIKEKIKTISDVEGH
IRAYIEEGKHEHQEQKESQLQETNTLLHVAERHKEKISKEKENIRQDIDTQNVQERWLQD
NLTLRKRVEELRELVVKREAFCKQIGNMQVTQLRQERREAERKLEELKNNRSTAFGRQKG
FEEELLHHKKELREDQYGKADERYKNKMITMRTTELVIEDLKLYYAALDQAIMKYHSMKM
DEINKLIRDLWRSTYRGQDIEYVEIRSDVDESSAGARRRVYNYRVVMIKGDTSLDMRGRS
SAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALIEIIKSRSRQRN
FQLLIITHDEDFVELLGRSSYIEHFYRIRKNREQNSEIIKCSISSLSSYLH
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaattgacaaaatgagcatcatgggggtgcgaagctttggaattgaagacaaa
gacaaacaagtaatcgagttctttactccccttacggttctggttggttccaacggagca
ggcaaaacgaccataattgagtgcctcaggtatgcaacttcaggagaccttcccccaggt
tctaaaggaattgctttcgtccatgatccaaaggaggcccacgaaacagacgtgcgggca
cagattcgacttctgttctctgatgtcaacggagacaaaattgccatccaacgttccatg
tcgtgtacccagaagacgaagaattacacctttaaaagcttagagcaggttattactcgg
ttaaaggatggtgaaaaggtgagcttgtcatccaagtgtggcgagttagaccgcgagatg
atttctgcacttggcgtttccaagcccgtgttgaataacgtcatattctgccatcaagat
gattccaactggccacttagtgagggcaagtcgctcaaagaaaagtttgattccatcttt
gctgcaaccaagtacatcaaagctctggagacgatgcgtcagttgcgtatcaagcagagc
aacaccgtgaaagagtgccaggtggagttgcactttttgaagcagaacaaagagaaggcc
cagcagattagagagcttgtcgcctacaaagaagatcaactgatggcctccagggaccgt
gtccagatgctggaaagccaaatcgagccactggaaaatcagctggcagacatcgacttg
aaactgggcaaggtgatgaagctggacaatgatatcaaggtattggacagcaggaagaaa
cagatggaggaggacaacaaggagctcgaggaaacaatggaaaagatgttccagggttcg
accgagcagctgcaagaggcttacctgaaccaccagagaaccgtaagggagaaggaaagt
agactgaaggactgccagaagcagctggagcaagccgacagagagtgtcagagactcaac
aggcaaaagtccgagctcctagtggaacgaggacgtctccaagtagagtctgactgccac
acacaaaacatcaagaaccgtgacactcaggtccgcttattgtcgtcccaactggagatg
gaaggctacgaccggccgcccttcacgactcttcagctccagagcttccatcgtcatgtc
actcaaagactggagcaggaaagaatgaaagttgctcaggttatggcggacatgcaggaa
aaggagcagcagaaacaacaatcaattgatgatatcagggataagaagacgggtctggag
agaatcatcgaactgaaaaaagacatgcagctaaagaagcagcttgagctccagaatgtc
cacactgagctgcagaggcttgaaggttcgtccggcagaatgcacgagctggaaagcgag
ctggccaaagcggaacatgagctgcagagtgccctcgagacgtccaacgtagaggggctg
aaggtcgaggttgaggcgctccagagagaaaaggcagagctcgaccgcacacagaggcag
ctggaccaagagatggccgtgctcaacatgcacacaacagcacgtactcaaatggacatg
ttgactaaggacaagaaagcgaaagaggagcaggtacgcaagatcaagtcacgtcatagc
gatgaactggtggcactgctgggccactttcccaacaaaagagaactggaggactggctt
tacgctaagtcaaaggaaataaacagaaccagggacaaactcgccaaactcaataaggac
ctggcatccagcgagcagaataagagccacattgctgctgagctccgtaaaaaggagcag
cagttgacaaatgatgaagaaaagttcttcaacgtctgcggcagtcaagacctggagcag
gacctcagcaaattacaagaggacctggaaaaaatttccaaacaaagagccatgcttgct
ggagccactgccgtctacacccagtttatcagccagctgaccgaggagagggagccatgc
tgccccgtctgccagcgaacgttcccatccgagccggacttacaagaggtcatcagcgac
atgcaatccaaattgcgtctggttccagacaagctgaagaacaccgagcaggacctgaag
aggaaggaaagaaggagagatgagatggtgacactaagaccagtcaggcagtccattgtg
cagttacaggagaatgagttgcctgagctgcgaaatcgactgcagagtgtgaacagagat
attgagaggctgaaaagagatgtggaggaacaggagactctgcttgatgctctgatgtca
gaggaggaaaccgtcaaggcctgtcagcaggacatcgctctgatggacagattcctgatg
gatctaaaagaagtggaggtgaaaatagctcagaacgcagctaaactccagggagtagac
ttgaccagaaccgtccagcaagtcagtcaggagaagcaggagactcagctcaaattagac
actacatccagcaggatggatctgaaacgcaagctgatccaagaccagcaggatcggatt
cagatgctgaagagttgtgtgaacgagaccaaagcggagaaactccaactgagcagcgac
atgcagaagcagcagcagctggaggagcagcgtgctgatttctccgctgagaatcagacc
ttaaccagggacatccgggaagcgaaggagcagctgtctccgctgatctccacgttgcat
aagatgcaacaggaaaaagaggagatgatgggacgtcgaaggcagaagcaggaggaagga
caggaaaagatcaacaccatcaaagagaaaataaagaccatctccgacgtggaagggcac
atccgcgcgtatattgaagagggcaaacatgaacaccaggagcaaaaagaatctcaactt
caagaaaccaacacgctgctccatgtggctgaacgtcacaaagagaagatcagcaaagag
aaagaaaacatccgtcaggacatcgacactcaaaatgtgcaagagcgctggttacaggac
aacctgaccctaagaaagcgtgttgaagagctaagagagcttgtggttaagcgggaggcc
ttttgcaaacaaataggcaacatgcaagtgacacaactgcgccaagaacgacgtgaagcc
gaacgcaagttggaggagctgaagaataaccgcagcactgcgttcggtcgccagaaaggc
ttcgaggaggagttgctgcatcacaaaaaagagttgcgagaagaccaatacggtaaagcg
gacgagcgctacaaaaacaagatgatcacaatgcgtacgacagagctggtcatcgaagac
ctgaaactctactacgcagccctcgatcaagccatcatgaagtaccacagcatgaagatg
gatgaaatcaacaaactcatcagagacctttggcggagcacctaccgaggacaagatatt
gagtatgtagaaattcgctcggacgtggatgagtcttctgccggagcgcgacgaagagtt
tacaactatcgagtcgtcatgataaaaggagataccagtttggatatgagggggcgctcc
agtgctggccagaaggtgttggcatctcttattatccgtcttgccttggcggagaccttc
tgtctgaattgcgggatcctcgcactggatgagcccaccaccaacctggacagagaaaac
atcgagtcgctggcacacgcccttatcgaaatcatcaagagccgctcccgccagcgcaac
ttccagctgctgatcatcacgcacgacgaggactttgtggagctgctgggccgctccagt
tacatcgaacacttctaccgcatccgcaagaaccgggaacagaactctgagatcatcaag
tgcagtatcagctctctctcttcctatttacactga
DBGET
integrated database retrieval system
