Syngnathus scovelli (Gulf pipefish): 125982755
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Entry
125982755 CDS
T08785
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
125982755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125982755
03036 Chromosome and associated proteins [BR:
sscv03036
]
125982755
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
125982755
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
125982755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
125982755
NCBI-ProteinID:
XP_049599704
LinkDB
All DBs
Position
15:6583516..6598840
Genome browser
AA seq
1853 aa
AA seq
DB search
MLSATTSKMNVLITKLHEYLAHSTHEDSNDTPEPHDVTNRNRSVEKSAAPSVMEALVDSK
FSRRKPSVVIKHSGLDESADSNDSDNVDFPFSTNGYPDTTCLPKGTVLVRPEPVDNSRDD
FRGPEFRSRKSSVFRKEFSRRRGGHSSAAIDQLEIVSCTACGRQVNHFQRDSLIRHPVLK
VLICKSCSKYYSSDDISKDGNGMDDQCRWCAEGGNLICCDFCSNAFCKKCILRNLGRKEL
SSILASEWYCYVCNPEPLFGLMMTCDNVLENMEPLWQQHRKRNRAEPGKSEVYGDLPLPQ
IPPFPTRDHSGMDGTVVFNYNTLNVSKDMTAKVKHLVDSANNVNTSFLHFIHTATKVKQG
VRSLYLKSYLSVVKSTRASLAALEESIKEEFSDLDVSSCWEELLNDNVEAPPAAEADAKI
SSEGSLNNLPKLSDEQLEREVLSKSTSEHVQNLRTIDVQSPQSSLKMTKKLVVKLRPVPL
AQEPCSNAQLLSKDIAEEKMNGKDVSGNEEMAVADSKLTVDHPSALLHLEEEQGSRRSPR
VKTTPLRRPSDVKGKPAVSTADSESDSENEAQPSSAAAQTTKEQSQTRDDSDSDEIPAVL
LERVAMTQSLDYQQSDAEDEDNNDDSPASGKMAKKRLLWLTKNTQISPERIRRKRKLLDR
SSESDSIAKIQRELGTDSSSDDQDLQNQKQHPKTLRPIGKSHLVKSETEGCARQRGITEA
RMHKTHTHQEVIVTSSSSSEDDEDSESDADDHKMKAITEDGKSVGPATFHPFSGNQDEAG
PTWAAGDEDDPENRLAKNILLAQINANLSSLDELSADEETQDDESSSEAEKDFKEVSEEC
GEDGQNLSSDAGTDGSNLRQHPLLRHKLTLDEGTGSDKAALGNKTRKADRKRRVVPKELS
SNDESEVTDNSSDTQVSAMSEELSDSEDEENLESSSPKVKEETLRPSPFVSKTPVTCILL
SDTSSDENEQDNSEGDFNSSQGTPKGRKKIRRIIQDDNLRSETQEALREEEERCRRLASR
EQLMEERREAIVIDHSQESVTTKLILDQDEGTKTPLVQVHRNLVINLKPHQVDGVQFIWD
NCCESVKKANSSPGTGCILAHCMGLGKTLQVVAFLHTVLRSKVLHFKTALVVCPLNTVLN
WVCEFNKWQKELGKDIVKVTELATKKNILTRLQAIQSWHTTGGVMIMGYEMFRNLSLYPK
LSDSRLKQQLKSLLVDPGPDFVICDEGHILRNESSNISIAMGAVKTRRRVVLTGTPLQNN
LVEYHCMVNFIKKNLLGSLGEFRNRFVNPIQNGQCADSTPKDVRIMKRRAHVLHAMLARC
VQRRDYSELAEFLPPKYEYVVAVRVSPLQYKLYSHYLQHVSGLGNVIGTAKMKVGANLFK
DFQVLGRVWTHPWCLQLSYNTKEKKNSRDLAKKNTSAPLMESGPSNSNSIDPTQTAGANV
ASQALADPWWFKNMLSQNDAEILEHSGKLVLLFEILKMAEALNDKVLVFSQSLVSLDLIE
SFLAASHRRRKESPEERSWTKNMDYYRLDGSTSAAFRTKWSNCFNKSSNTRGRLFLISTR
AGSLGINLVAANRVIIFDASWNPSHDIQSIYRVYRFGQVKQVFVYRFLAQGTMEEKIYDR
QVTKQSLSYRVVDQQQIERHFTLSELTELYTFEPDLLDEPQSRKTKRKTSDLPKDQILAM
LLEKCKDQIVSYHEHASLLDHKQEEELTEAERKDAWAEYQAESHTASAPVKISLDTLNMR
TNEELMHLLNKSRENLAAAFQAMQGMTSHPLEEYIVHVWRQNPQMPLEFIKTKAGQWKQA
DAKELERRKAHYTEVLEEQRLLTLHIQTILSERRNQELQGATPSAENQQTSSN
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atgttgagtgctacgacaagcaaaatgaatgtattgatcaccaaattgcacgaatacctg
gcccattctacacacgaggacagtaatgacacacctgaacctcatgatgttacaaacaga
aatcgttcggtggaaaaatcagcagccccctctgtgatggaggcactggtggactcaaaa
ttctccagaaggaaaccttctgttgttataaagcattcaggcttggatgagtctgctgac
tcaaatgacagtgacaatgtagattttccctttagtacaaatggttacccagacaccact
tgccttccaaaaggcactgttttggtcagacctgaacccgtagataacagcagagatgac
ttcaggggtcctgagtttcgcagccgtaaaagtagcgtgttccggaaagaattttcaaga
agacgtggaggtcactcaagtgctgcgattgatcagttggaaattgtcagttgcactgct
tgtggtcgtcaagtaaaccacttccagagagattctcttattcgccacccagttctcaaa
gtgcttatttgcaaatcatgctccaaatattactcgagtgacgacataagcaaagatgga
aatggaatggatgaccagtgtcgttggtgtgcagaagggggcaaccttatctgctgtgat
ttctgcagtaatgccttttgcaagaagtgcatcctgagaaatttggggcgaaaagagctc
tctagcattttggcaagtgagtggtactgctatgtgtgtaaccctgagcccctttttggc
cttatgatgacctgcgacaacgtcttggagaacatggagcctctgtggcaacaacaccgc
aagagaaaccgagctgagccagggaaatcggaagtatatggggacctgcctctacctcaa
atccccccctttcctacacgggatcatagtggtatggatggtactgttgtattcaactac
aacactttaaatgtctccaaggatatgaccgctaaggtgaaacatttagtggactctgca
aacaatgtgaacacgagctttcttcatttcattcataccgccacaaaggttaagcaaggt
gttcgaagcctctatttgaagtcatatttgtcagtggtaaaatccacgcgggcgtctctt
gcggcactcgaggaaagcattaaagaagaattcagcgacttggacgtttccagctgttgg
gaagagttacttaacgataacgttgaggccccacctgccgctgaagcagatgcaaagatc
tccagtgaaggaagcttgaataacttgccgaagctgtcggatgaacaactggaaagggaa
gtcctcagcaagagcacaagtgagcacgtgcagaatctgcggacgattgacgtgcagtct
cctcaaagtagtctcaaaatgaccaaaaaactagtggtcaaacttcgaccagtacctctg
gcacaggagccctgctcaaatgcacagctcctttcaaaagacattgctgaagagaagatg
aatggaaaagatgtgtccggcaatgaagagatggctgtagctgacagcaaattgactgta
gaccacccaagcgcactactccacctcgaagaggagcagggcagtcggaggtccccccgt
gtcaagaccacaccattgcgtcgtccaagcgacgtcaagggtaaacccgctgtctccaca
gcagacagcgagagcgattcggaaaacgaggcacagcccagctcagcggctgcccaaacc
actaaagaacaaagccagaccagagatgactctgactccgatgaaatacctgccgtgctt
cttgaacgagtagcaatgactcaaagcttagactatcaacaaagtgacgctgaagacgag
gacaacaatgacgacagtccagcatctggcaaaatggccaaaaagcgtctcctctggctc
acaaagaacacacagatatcccccgagaggattcgccgcaaacgtaaactgctggaccgt
tcgtccgagtcggactccattgcgaagattcaacgggaactgggaacggattcctccagt
gacgatcaagacctgcagaatcaaaagcagcacccaaagaccctcaggcccatcggcaag
tcgcatcttgtcaagagcgaaacggaagggtgtgctcgacagcggggtataacggaggcc
agaatgcacaagactcacactcaccaggaagtaatagtgacctcgtcgtcgtcaagcgag
gatgacgaggactccgagagtgacgccgacgatcataagatgaaagcaatcacagaagat
gggaagtcagtgggaccagcaacttttcatccattttctggcaatcaggatgaagctggg
cccacctgggcagcaggggatgaggacgaccccgaaaatagactcgctaagaacatactt
ttggcccaaatcaatgccaacttgtcatcgcttgatgagttatcagcagatgaggaaaca
caggacgatgagtcgtcttctgaggctgaaaaggattttaaagaagtcagtgaggaatgt
ggagaagatgggcaaaacttgtcatctgacgctggcactgatggctccaacttgaggcag
caccccttgctgcgccacaaactcaccttggatgagggcacaggaagtgacaaggcagca
ttagggaataaaacacggaaggcagacaggaagaggagagttgtccccaaggagctgagc
tctaatgatgagagcgaagttactgataactcatcggacacacaagtatctgcaatgagc
gaggagctgagtgattcagaggatgaagagaacctggaaagttcatcacctaaagtcaag
gaggagacccttcggccatctccgtttgttagcaagaccccggtgacctgcattttgttg
tctgacaccagcagcgatgagaatgaacaagataactctgagggtgattttaacagcagt
cagggcacacccaaaggacgcaaaaaaatccgacgaatcatccaagatgacaatctccgg
tctgagacccaggaagcgctacgggaggaggaagagagatgtagacgactagcaagtagg
gaacagctgatggaggagcgtcgagaggcaattgttatagatcattctcaggagtccgtc
accaccaagttaattctggatcaggatgaggggaccaagacaccgctagtccaggtgcac
aggaacctagtaattaatctcaagcctcaccaagtggacggagtccagttcatttgggac
aactgctgtgagtcagtgaagaaggccaactccagtccaggaacaggttgcatcttggct
cattgtatgggcctgggaaagaccctgcaggtggttgccttcctgcacacggtattacgg
tcaaaagtcttacattttaaaacggccttggtggtgtgtcctctcaacactgtgctcaac
tgggtttgcgagttcaacaaatggcagaaagagttagggaaagatatagtgaaggttact
gaattggccaccaaaaagaatattctcacacgactacaagcaattcagagctggcacacg
actggaggtgtgatgattatgggctacgaaatgttccgaaacctctcgttataccccaaa
ctgagcgacagcaggttaaagcagcagcttaaaagcctactggtggatccaggaccagac
tttgtgatatgtgatgaagggcacattctgcgcaacgagtcctccaacatttctatagcc
atgggtgccgtaaagacgcggcggagagtggtgctaactggcacaccgttgcagaacaac
ctggtcgagtaccactgcatggtaaatttcatcaagaagaaccttctgggttcactgggg
gaattccgaaaccgcttcgtcaaccccatccagaatggccaatgcgccgactccacaccc
aaagatgttcgaatcatgaagaggcgcgcgcacgtcctccatgcaatgctggccagatgt
gtgcaaaggagggattactccgagctagctgagtttctgcctcccaaatacgagtatgtg
gtggcagtcagggtgtctccacttcagtataagctatacagccactacctgcagcatgtc
agtggtttgggcaacgttatcggcactgcaaaaatgaaggtcggcgcaaacctgtttaag
gattttcaggtcctcggtcgggtttggacgcatccttggtgccttcaactcagctataat
accaaagaaaaaaagaacagtagagatttggcaaagaagaataccagcgctccactcatg
gaaagcggaccaagcaacagcaatagcattgacccaacccaaaccgctggagcaaatgtt
gcatcacaagcccttgcagatccgtggtggttcaaaaatatgttgtctcaaaacgatgcc
gaaatcctggagcactctgggaaattagtgctcttatttgaaatcctgaagatggctgaa
gccttgaacgacaaagtgcttgtgttcagtcagtctctggtctcgttagacctgattgag
agtttcctggcagcttctcaccgaagaagaaaggagtcacctgaagagagaagctggact
aaaaacatggattactaccgtcttgatggctctacctccgctgcattccgtacaaaatgg
tcaaattgtttcaataagtcctcgaatacacgtggccgcttgtttctgatctcaacaagg
gctggctcgctgggcatcaacctggtggctgccaacagggtgatcatctttgacgcctcg
tggaatccttctcacgatattcaaagcatctacagagtgtaccgcttcggccaggtcaag
caagtgtttgtgtatcgcttcttggcacagggcacaatggaggagaagatctatgatcgc
caagtgacgaagcagtctttgtcctaccgagtggtggatcagcaacagatcgagagacac
ttcaccctttccgagctcactgaactttacacgtttgagccagatttactggacgagcct
caatccaggaaaactaagcggaagacctctgacttgccaaaggatcagattctggcgatg
cttctggagaaatgcaaagaccaaatagtcagctaccatgagcatgcatctctgctggac
cataaacaagaggaggagctcactgaagcagaacgtaaagatgcctgggctgagtatcag
gctgagtcccacacagccagcgccccggtgaaaatcagtttggacaccttgaatatgagg
accaatgaagagctgatgcacttgctgaacaaaagcagagaaaatttagcggccgccttc
caggccatgcagggtatgacgtcacatccccttgaggagtacattgtacacgtgtggcgc
caaaatccacaaatgcccttggagtttatcaagacgaaggctgggcagtggaaacaagct
gacgcaaaggagctggagcggagaaaggcccattatacagaagttcttgaagagcagcga
ttactcacattgcacatccagaccattttgagcgagcgacgcaatcaagagctacagggg
gcgactccatctgctgaaaatcagcaaacatcaagtaactaa
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