Syngnathus scovelli (Gulf pipefish): 125982994
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Entry
125982994 CDS
T08785
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-2 isoform X1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04080
Neuroactive ligand-receptor interaction
sscv04082
Neuroactive ligand signaling
sscv04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125982994
04082 Neuroactive ligand signaling
125982994
04519 Cadherin signaling
125982994
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125982994
Ion channels [BR:
sscv04040
]
Ligand-gated channels
GABA-A
125982994
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
125982994
NCBI-ProteinID:
XP_049599770
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All DBs
Position
1:21108820..21127116
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AA seq
477 aa
AA seq
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MLCFLFTGCRCGGRPPCVGVEAAMWSGKSAPLLLSCLPLMALWITRSVKADTTSDAFKTN
ITLFTRILDSLLDGYDNRLRPGLGDRVTEVKTDIFVTSFGPVSDTDMEYTIDVFFRQAWK
DERLKFHGPMNILPLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIKDDGTLLYTM
RLTVHAECPMHLEDFPMDFHSCPLKFGSYAYTISEVTYAWTLNASDSVVVEGESSRLNQY
DLLGQTAGQETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRES
VPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFT
KRGWAWDGKSVVTDKKKERTSVIKKNNAYAVAVANYAPNITKDSSTLPTIAKGGALESNK
VRGDGKIPDSKKTFNSVSKIDRMSRILFPVLFGSFNLVYWATYLNREPVIKDMVPST
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgttatgttttctattcactggttgtcgttgcggtgggcgtcctccttgtgtcggtgtt
gaagcagcaatgtggagcggcaagagcgcgcctctgctcctctcctgcctgccgctcatg
gctttgtggataaccagatcggtaaaggcagacaccacttctgatgccttcaaaaccaac
atcaccctattcacacgcatccttgacagcctgctcgatggctatgataaccgtcttcgc
cctggtctaggagacagggtcactgaggtgaagacggacatcttcgtcaccagttttgga
cctgtttcagacacagacatggaatacaccatcgatgttttcttcaggcaagcctggaag
gatgagagattaaaatttcatggaccaatgaatatattgcctctcaacaacctgatggcg
agtaaaatctggacccccgacactttcttccacaatgggaagaagtctgtggctcataac
atgaccatgcccaataaattgctgaggatcaaagatgacgggacgttgttgtacacaatg
aggttaaccgtgcatgcagagtgcccgatgcatctggaggatttcccaatggactttcac
tcctgtccgcttaaatttggcagctacgcctacacaatctcggaagtgacttacgcttgg
actctaaatgcctctgattccgtagtagtggaaggagaaagctcgcgtctgaatcagtat
gacttacttggacaaacggcgggccaggaaactattaaatcaagtacaggtgaatacacc
gtgatgaccgctcatttccatttgaagaggaagattggctattttgtcatccagacctac
ctcccatgcatcatgaccgtcatcctctcccaagtgtctttttggctgaatagagaatca
gtgccggcaagaactgtatttggggtaaccacggtgctcacgatgacaacgctgagtata
agtgctcgcaactcccttcccaaggttgcatacgccaccgccatggactggttcatcgct
gtttgctatgcttttgtcttctctgctttgattgagtttgccacagtcaattacttcacc
aagcgtggctgggcctgggatggaaagagtgttgtgaccgacaagaaaaaagagaggaca
tctgtgatcaagaagaacaacgcctatgctgtagcagtggctaattatgcacctaacatt
accaaggattcaagcacgcttccaaccattgctaaaggaggtgctttagaatccaacaag
gtcagaggagatggcaagatccccgacagcaagaagactttcaatagcgttagcaaaatt
gacaggatgtcaaggattttgtttcccgttctctttggttccttcaacctggtttactgg
gccacctacttaaaccgagaacccgtcatcaaggacatggtgccctccacttag
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