Syngnathus scovelli (Gulf pipefish): 125983005
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Entry
125983005 CDS
T08785
Symbol
si:dkey-119f1.1
Name
(RefSeq) structural maintenance of chromosomes protein 6-like
KO
K22804
structural maintenance of chromosomes protein 6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125983005 (si:dkey-119f1.1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
125983005 (si:dkey-119f1.1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
Spc29
AAA_21
Laminin_II
AAA_29
Tup_N
FtsK_SpoIIIE
SMC_hinge
Annexin_2
Motif
Other DBs
NCBI-GeneID:
125983005
NCBI-ProteinID:
XP_049599773
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All DBs
Position
16:8469934..8479237
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AA seq
1090 aa
AA seq
DB search
MSKRKGSPVKSTPHKRLTSVQHDDNEEEDQDQAEDQDQLCTQEQIVAEVASDAGIVESIT
LKNFMCHSFLGPINFGSNVNIVVGRNGSGKSAILTALIVSLGGNAQATSRGSSLKSFVKE
GESSADVSVTLRNRGKDAYKPELYGASIIIDVRLSHDGVRTYKLKSQNGQTISTKKEELA
SILDNFNIQVHNPVSVLNQEMSKNFLHSKGEADKYKFFMKATQLEQMKEDFIHIKATKNM
TEDKVAQHGEYLKELRRKYLEKEDRYKSLSSVDEMQTKLEELQKQMAWALVMEIEKGLEP
LKEKLQANKQSTEKYDEKVNEWKNKVKEAEQKYKLIQEQLESITQQVQELQPKCAELKAE
AQNRDALFKSSEVAVHRCQVSLRDLERDKAHLSSKINDLQLSINRATGCARQARVESMQR
INRHLEDLHHQTETLGQQISQYQHACARAKEEHAKIRREHDALKKSTEAHARNLRAMEGS
RSNRLRRFGEHMPALLYAIQDAHKQGFFKHKPRGPLGYLIRLKDPEQALAIEVCLQSLLQ
AFTCDNYDDEKVLKGLMGRVFGPQSGRRPPIITCKFLPNVHDTRRRAVNHPDYPSVLQTL
EIDDPVVTNCLIDQRGIESILLIKNRAEACDVMISRKPPPNCYQAFSKDGDQVFADRCYA
AEQTRANYLSGDVEEEIRHLQREVETQKSQASTLQRQMSKLEEDIKQNERLEMEAQAEMK
TAIDKATKYRLELSDLQNLEEPQLEDLKPLEEDLQEIVTKIAEENQKCDEARAQRSELKE
NYQKAEQEYNLHKERINTIVEKADAIKEELIKVDQEVMKCKHHKKYYDDKRGGHLQSIQE
LEDTLRNKEQEVQVNVLKATQIWPERLQVKRTAKSLDTEISRLKVKLATQQEQEGDRHEI
IREYRDALEKYKNTARQMKNLNMFIKSLDRVMNQRLKVFGDLRSFLSARCIYYFSVMLSQ
RGYTGTMNFDHKNETLVISVQPGRGSEGDLVNMRSLSGGERSFSTVCFVLSLWAITEAPF
RCLDEFDVYMDMVNRRISMDMILQVAESQRYRQFIFLTPQSMSSLPETDLINILRLKDPQ
RGQENQDEQS
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaggaaaggcagtcctgtgaaatcaactccccacaaacgactgacatcggtg
cagcatgacgacaacgaagaagaagatcaagaccaagctgaagaccaagaccaactttgc
acacaggagcaaattgtggctgaggtggcgagtgacgccggcattgtggagagcatcacg
ctgaagaacttcatgtgccactctttccttggccccatcaactttggatccaacgttaac
attgtcgtcggccgtaatggaagtggaaagagcgccatcctgacagcgctcattgtctct
ttaggtgggaacgcgcaggccacaagcagggggtcgtccctcaagagttttgtcaaggaa
ggtgaaagctcggccgacgtgtccgtcaccttgcgcaaccgaggcaaggacgcctacaaa
cctgagctgtacggcgcttccatcatcattgacgtgaggctcagccacgatggcgtgaga
acctacaagctaaagagtcaaaacgggcaaacaatctcgaccaaaaaggaggagcttgcg
tcgattctggacaattttaatattcaggtccacaatcctgtgtcagttctcaaccaagag
atgagtaagaacttcctgcattccaaaggagaggcagacaagtacaagtttttcatgaag
gccacgcaactggaacagatgaaagaggactttatccacattaaagccaccaagaatatg
accgaagataaagtggcgcaacatggcgagtacttgaaggagctgaggcgaaagtacctg
gagaaagaggatcgctacaagagcctgtcgtccgtggatgagatgcagaccaagctggag
gagttacagaagcaaatggcctgggctctggtgatggagatagagaagggactggagcct
ttgaaagagaaactgcaggccaataaacaatctacggagaaatacgatgagaaagtgaac
gaatggaagaacaaggttaaggaggccgaacagaagtacaaactgatccaagaacagctg
gagagcatcacacagcaggtgcaggaactgcagcccaaatgtgccgagctcaaggcagag
gcgcagaaccgcgacgcccttttcaagtccagcgaggtcgcggtccacagatgccaggtc
agcctgagggacctggagcgggacaaggctcacctgtcttccaagatcaacgatctgcag
ctcagcatcaaccgggcgacgggctgtgccaggcaggccagggttgagagcatgcagcgc
atcaaccgccacctggaggatctccatcaccagacggaaacgctgggccagcagattagc
cagtatcagcacgcctgcgcccgggccaaggaggaacatgccaagatacgacgagagcac
gatgcactgaagaagtccactgaagcccacgcgaggaacttgcgggcgatggaaggcagt
cgatccaatcggctgcggcgctttggcgaacacatgccagcgctgctctacgccatccag
gatgcgcacaagcaggggttcttcaagcacaagccacgaggacccctgggttacctgatc
agactgaaggacccggagcaggctctcgccatcgaggtttgcttgcaaagtctactgcag
gccttcacttgcgacaactacgacgacgagaaagtgctgaagggactcatgggcagagtc
tttgggccgcagtcgggccgccggcctcccatcatcacctgcaagtttctcccaaacgtc
cacgacaccaggaggagggctgtgaaccatccggactacccatcagtgcttcagactcta
gaaattgatgacccggtggtgaccaattgtctgatcgatcaaaggggcattgagagcatt
ttactcatcaagaatcgggccgaggcttgtgacgtgatgatttccagaaagccgcccccc
aactgctaccaggctttctccaaagacggcgaccaggtttttgccgaccgctgctacgct
gccgagcagacgcgagccaactacctgtcaggagacgtggaggaggagatcagacacctg
caaagagaggtagagactcaaaaatctcaggcgtcgaccctgcagcgccaaatgagcaag
ctggaagaggacatcaaacaaaatgagagactggagatggaagcccaagcagaaatgaag
actgccattgacaaagccacaaagtatcgactggagctgtcggacctgcagaacttggaa
gagcctcagctggaggacctcaagccgctggaggaggatcttcaggagattgtcaccaag
atagcggaagagaaccaaaagtgcgacgaggcgagagcccagaggtctgagctcaaggag
aactaccagaaagcggagcaggaatacaacctgcacaaggagcgcatcaacaccatcgtt
gagaaggccgacgccatcaaggaggagctgatcaaagtggaccaggaggtgatgaagtgc
aaacatcacaagaagtactacgacgacaaacgcggtggccatctccaaagcatccaggag
ctagaggacaccttgcgcaacaaagagcaggaagtacaggtcaacgtgctcaaagccacg
cagatttggcctgagcgcctccaagtgaagcgcaccgccaagagcttggacacggagatc
agccgactcaaggtgaagcttgccacccagcaggagcaggagggcgaccgccacgagatc
atcagagaataccgtgacgctctggaaaagtacaagaacacggcgcggcagatgaagaac
ctcaacatgttcatcaaaagcctggacagggtgatgaatcaaagacttaaagtttttggt
gacctgaggagttttctgtcggcgcgctgtatatattacttcagtgtcatgctgtcgcag
aggggctacacgggaaccatgaacttcgaccacaagaacgagaccctcgtcatctcggtg
cagcccggaagaggaagcgaaggcgacttggtgaacatgcgctcactttcggggggcgag
cgctccttctccaccgtctgcttcgttctctcgctctgggccatcacggaggcgcccttc
cgctgcctggacgaatttgacgtttacatggacatggtgaaccgcaggatctccatggac
atgatcttgcaggtagctgagagccagcgctaccggcagtttatcttcctcacgccacag
agcatgagttctctcccggaaaccgatctcatcaacatcctccgtcttaaggatccgcaa
cgaggccaagaaaaccaagatgagcaatcctaa
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