Syngnathus scovelli (Gulf pipefish): 125983058
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Entry
125983058 CDS
T08785
Name
(RefSeq) thyroid hormone receptor alpha isoform X1
KO
K05547
thyroid hormone receptor alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04080
Neuroactive ligand-receptor interaction
sscv04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125983058
04081 Hormone signaling
125983058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125983058
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sscv03310
]
125983058
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
125983058
Nuclear receptors [BR:
sscv03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
125983058
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
125983058
NCBI-ProteinID:
XP_049599886
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Position
16:complement(1784551..1814754)
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AA seq
415 aa
AA seq
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MEPESKKQNNDSSVKDEKGWLDVPKRKRKNSQSSMKSMSALSISVPGYIPSYLEKDEPCV
VCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKK
CISVGMAMDLVLDDSKRVAKRRLIEENREKRKREELVRTLQVRPEPNTSEWELISKATEA
HRHTNAQGSSWKQKRKFLPDDIGQGVMPTSEGDKVDLEAFSEFTKIMTPAITRVVDFAKK
LPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLKNGGLGVV
SDAIFDLGKSLAQFNLDDSEVALMQAVLLMSSDRSGLTSVEKIEQCQEAYLLAFEHYINY
RKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFEDQDV
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggagccagagtccaagaagcagaataacgactcatcggtgaaagatgagaaagggtgg
ctcgatgtgccaaagaggaaaaggaagaacagccagtcttcgatgaagagtatgtctgct
cttagcatctctgttccagggtacatccccagctacctggagaaggatgaaccatgtgtg
gtgtgcggcgacaaggccactggataccactatcggtgtatcacgtgcgaggggtgcaag
ggtttcttccgtcgaaccatacaaaagaacctccacccggcgtactcgtgtaaatacgaa
ggctgctgcatcatcgacaagatcacccgcaaccagtgccagctttgccgttttaagaag
tgcatctcagttggcatggccatggacttggtcttggatgactcaaagcgcgtagcaaaa
cggcgtctcattgaggagaaccgggagaaacgaaaaagggaggagttggtgcggacgctg
caggtgaggccggagccaaacacttccgagtgggagctgatcagcaaggcgaccgaagcc
catcggcataccaacgcccagggatcaagttggaaacagaagcgcaagtttctgccagat
gatataggtcaaggagtgatgcccacatcagaaggagataaggtggacctggaagccttc
agtgaattcaccaagatcatgacgcctgctatcacacgtgtggtggactttgccaagaaa
ctgcccatgttctcagagcttccatgtgaagaccagatcatcttgttaaaaggatgctgc
atggagatcatgtcacttcgcgctgccgtgcgctacgatcccgaaagcgagacattgaca
ctaaacggcgagatggccgtgaaacgtgagcagttgaagaacggcggcttgggtgtggtc
tcggacgccatctttgatttaggcaaaagcctggcccagtttaatctggatgactcggag
gtggcgctgatgcaggctgtccttcttatgagctcagatcgctccgggttaacaagtgtg
gagaagatcgagcagtgccaagaggcgtacctgctggcctttgagcactacatcaactac
cgcaagcacaacattcctcacttctggcccaagctgttgatgaaggtaacagacctgcgt
atgatcggagcgtgccacgccagccgcttcctacacatgaaggtggagtgtcccaacgaa
ctctttccaccgctcttcttggaggtctttgaggaccaggatgtgtga
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