Syngnathus scovelli (Gulf pipefish): 125983119
Help
Entry
125983119 CDS
T08785
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03440
Homologous recombination
sscv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125983119 (top3a)
03460 Fanconi anemia pathway
125983119 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sscv03032
]
125983119 (top3a)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125983119 (top3a)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
125983119 (top3a)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Topoisomerases
125983119 (top3a)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
125983119 (top3a)
FA (Fanconi anemia) pathway
125983119 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
HisG
zf-C2H2_10
Lar_restr_allev
Motif
Other DBs
NCBI-GeneID:
125983119
NCBI-ProteinID:
XP_049600017
LinkDB
All DBs
Position
16:complement(1155628..1162232)
Genome browser
AA seq
1003 aa
AA seq
DB search
MQVVNLLTKHLLRLGQQRRRIQLKCYSTAHDSLATLDMMRRGQIKRVLCVAEKNDAAKGI
SEIMSSGRSMRREGLSKFNKIYEYEYHLFGQNVTVAMTSVSGHLLGLEFKAPYDKWRSCN
PVLLFDAEVEKYCPDGMVQIKRTLEKEVRQCQALIIWTDCDREGENIGFEVINVCKAVKP
NLQVFRAKFSEITPNSIRRACETLAEPDVNVSDAVDVRQELDLRIGASFTRFQTLRLQKI
FPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDTVEFGWKRYR
LFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPMPLDTVELEKLASRKLRISAKETMK
IAEKLYTQGFISYPRTETNIFPASLALSPLVEEQMQSPEWGAFAQRVLEQPGGPNPRQGK
KSDQAHPPIHPTKYTSTLQGTEGRVYEFIVRHFLACVSQDALGHETIVDIDIAQERFSTS
GLMIVARNYLDVYPYDKWSTKVIPVYEQGSQFQPSAIEMVDGETSPPQLLTEADLISLME
KHGIGTDATHAEHIETIKSRKYVGLTADQRFLPGELGMGLVEGYNAMGYEMSKPHLRAEL
EADLKLVSEGRKDKRSVLQHHIQKYKAVFIESVRKAKKLDEALSPYLGAALEIPETEQQD
MEIPLPIRKCPHCGRDMVLKKRKEGNGKFLTCVGFPACKTAVWFPDTVLEVGRDDSVCSI
CRPRPVHMLKFKFRRGSLPPMMPLEFVGCIGGCDETLREVLDLKYLRGGDGGGREVPPRP
APPRESNARPCAPPSAPSWTAPPRPPPGGNNIGAPSNDVIVCNCGQDAILLTVRKDGPNQ
GRQFYKCNSGTCNFFLWADPPSHQGAQQNHWPPPPPPPPSTPLLGFRNTAGGGGSRPKGG
AGDTKCNCNLATVTRTVQKDGPNKGRVFHTCGKPRDQQCNFFQWADENMEAQGGFQDGGF
NSNRDGGKKGRKLKEDKPPAAKKPRSCGICHMPGHTRITCPQR
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcgtgaacctcctcacaaaacatctgcttcgactgggacaacaaaggcgacgg
atccagttgaagtgttactctacagcccacgattcattggcaactttagacatgatgcgg
aggggtcagatcaagagggtcctctgcgtagcggagaagaatgatgccgccaaaggcatc
tccgaaattatgtccagtggcaggtccatgcggagggaaggactgtccaaatttaacaag
atctatgagtatgaatatcatctctttggtcagaacgtgacggtagcaatgacatcagtc
tcgggacatttattaggtcttgagtttaaagccccttatgataaatggcgcagttgcaat
ccagtgctgttatttgatgccgaagtcgagaagtattgcccagatggcatggtacaaatt
aagcgtacactggaaaaggaggtgagacaatgccaggccttaattatctggactgactgt
gacagagaaggagagaacattggctttgaagtcatcaatgtctgtaaggcagtgaagcct
aatttgcaagtgtttcgggcaaagttttctgaaatcacccccaactccattcggagagct
tgcgagacactagccgagccggacgttaacgtcagtgacgccgttgatgtccgccaagag
ctcgacttgcggataggtgcatccttcacaagattccagacccttcgcctccagaagatc
ttcccagagtctctggccaatcagctcatctcttacggcagctgccagtttcccactctg
ggtttcgtggtggagcgtttcaaagccatccaggctttcattcctgagactttctacaag
attaaagtgctacacgaagttgaggaggacactgtggaatttggatggaaacgatatcgg
ctattcaaccacacagcttgcctagtgctctaccagatttgcatggaggatcccatagca
acagtcacctcagtaaccagtaagcccaagagcaagtggagaccaatgcctttggacact
gtggaattggaaaaactggcatctcggaagctgagaatcagtgcaaaagagacaatgaaa
attgcagagaaactttacacacaagggtttatcagctaccctcgcacggaaaccaacatt
tttccagcatccctcgctctcagccccttggtggaggagcagatgcaaagccctgaatgg
ggggcatttgctcagcgggtgcttgaacaaccagggggtcccaacccacggcagggcaaa
aagtcggaccaagcccatccccctatacacccaaccaaatacacaagcacgctacaggga
actgaaggacgtgtgtacgagttcattgtccgacacttcctggcttgtgtatcccaggat
gctttgggacatgagaccattgtggacatagacattgctcaggagaggttttccacttca
ggcctcatgatcgtcgcgaggaattacctagatgtttatccttacgacaagtggagcacg
aaggtgattccagtatatgaacaaggctcccagttccagccatctgctatagagatggtg
gacggtgagacgagtccgccgcagctgctcactgaagctgacctcatatcgttgatggag
aagcacggcattggcaccgacgcgacacacgcagagcacattgaaaccataaaaagtcgc
aagtatgtgggcttgacagctgatcagaggtttctccctggggagcttggcatgggactt
gtggaagggtacaacgccatgggctatgaaatgtcaaaaccacacctacgggcagaattg
gaggcagacctcaagctggtatcagaaggaaggaaggacaaaaggagcgtgttgcagcac
cacatccagaaatacaaggctgttttcatcgagtcggtcaggaaggcaaaaaagttagat
gaagctctgtcgccgtatttgggtgctgctctggagatccctgaaactgagcagcaagat
atggagatcccgctgcctatcaggaagtgtccccactgtggacgggacatggtgctcaag
aagaggaaggagggaaacggtaagttcctgacctgtgtgggcttcccagcctgcaaaaca
gccgtatggtttcctgacacggtgctggaggtcggtcgagacgacagcgtttgttccatc
tgccgcccgcggcctgttcatatgttaaagttcaaattccgaaggggcagtcttcccccc
atgatgcctttagagtttgtcggctgcatcggtggatgtgacgagactctccgagaggtg
ctggaccttaaatatcttcgaggaggagatgggggaggaagagaggttcccccaaggcca
gcaccaccccgcgaatcaaatgcaaggccttgtgcaccaccctctgccccctcttggacc
gcaccgcctcgtccaccaccagggggcaataacattggcgcacctagcaatgatgtcatt
gtgtgtaactgcggtcaggatgcgatcttgctgaccgtgcgcaaagacggtcccaaccaa
ggacggcagttctacaagtgcaattcgggaacttgtaatttctttctgtgggcggatccg
cccagccatcagggggcgcagcagaatcattggcctccgccgccaccaccaccgccatca
acgccactgctggggtttcggaacacagctggaggaggtggcagcaggcctaaagggggc
gctggagatacaaagtgcaactgtaacttggccacggtgacgcgcactgtgcagaaggac
gggcccaacaagggacgggtgttccacacctgcgggaaacccagagaccaacagtgtaac
ttcttccagtgggctgatgaaaacatggaagcacaaggtggcttccaggacggcgggttc
aatagcaacagagacggagggaagaagggaaggaaactaaaagaggataaaccccccgct
gccaagaaacctcgttcctgcggcatatgccacatgccgggacacacgcgcatcacttgt
cctcaacggtga
DBGET
integrated database retrieval system
