Syngnathus scovelli (Gulf pipefish): 125983126
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Entry
125983126 CDS
T08785
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04120
Ubiquitin mediated proteolysis
sscv04137
Mitophagy - animal
sscv04144
Endocytosis
sscv04340
Hedgehog signaling pathway
sscv04350
TGF-beta signaling pathway
sscv04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125983126 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
125983126 (smurf1)
04350 TGF-beta signaling pathway
125983126 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125983126 (smurf1)
04137 Mitophagy - animal
125983126 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
125983126 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125983126 (smurf1)
04121 Ubiquitin system [BR:
sscv04121
]
125983126 (smurf1)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125983126 (smurf1)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125983126 (smurf1)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125983126 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
125983126 (smurf1)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
HECT type E3
125983126 (smurf1)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
125983126 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125983126
NCBI-ProteinID:
XP_049600035
LinkDB
All DBs
Position
16:1202689..1211857
Genome browser
AA seq
729 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKADSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVLEGCFSEEPLPYSDPTGA
AGGGNCRLDSPSQENRLQSQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQQSQVKESSQAPQMDVGVDEGGGMGGVVGGDGDVAARYERDLVHKLKLLRHE
LSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWL
YLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLAVFHGHYING
SFTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVEHNAFGKFLQH
ELKPNGRNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFSELIPQHLLKAFDHKEL
ELIIGGLGKIDLADWKSNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLLQFVTGSTRVP
LQGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAV
EETCGFAVE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactcggaggaacggttccagcatcaaaatccgactgacagtatta
tgtgccaagaacctcgcaaagaaagacttctttcgtctacccgatccttttgccaaggtc
gtggtggacggatcgggtcaatgccactcgacagacacagttaagagcacactggacccc
aaatggaatcagcactatgacctctacattggaaaggcagactcaatcaccatcagtata
tggaaccataagaagatccataaacggcagggggcgggcttcttggggtgcattagactt
ctttcaaatgccatcagcagactaaaagacacaggataccagcggctagatctttgtaaa
ctgaacccctcagacagtgacgcagtgcggggacagattgtagtaagcctgcagacacga
gaccgcataggtagcggaggccctgtggtggactgtcgaggtctattggaaaatgatggg
cccgtgttagagggatgcttcagtgaagaacccctgccttattccgaccccaccggtgcc
gcgggtggcggcaactgccgtctcgactcgcctagtcaagaaaaccgtcttcagtcccag
cgaatccgggggcaggattcccgaggccatggccacacccctcagaacagacctcacggt
caccagccgcccgacctgcctgagggatacgagcagcgaacgacagtgcagggccaggtg
tacttccttcacacgcagacaggtgtcagcacctggcatgaccctcggatacccagggac
ctggccagcgtaagctgcgaagagctcggtccgttacccgtgggctgggaagtccgaagc
acggtgtcgggacgcatttactttgtcgaccacaacaacagaaccacgcagttcaccgac
ccgcgtctgcacaccatcatcagccagcagtcccaagtgaaggaatcctcacaggccccc
cagatggacgtgggggtcgacgagggcggaggaatgggcggcgtggtcgggggcgacggg
gatgtagcggcgcgctacgagcgagacctggtccacaaattgaagctgctgcgccacgag
ctctccctgcagcagccccaagctggacactgtcgcatcgaggtctcccgtgaagagata
tttgaggagtcgtatcggcagatcatgaagatgaggcccaaagacctcaagaagcgtctg
atggttaaattcagaggggaggagggcctcgactacggtggcgtggcgagggagtggctg
tacctgctgtgccacgaaatgctcaacccttactacggcctattccagtactccaccgac
aatatctacacgttacagatcaaccctgactcctccattaaccccgaccacctgtcatat
ttccactttgtgggccgtgtaatggggctggccgtttttcacggccactacatcaacggg
agcttcacgttgcccttctacaaacagctgttaggcaaacccattcagctcaatgacctg
gagacaaccgacccagagttgcacaagagtctcgtctggatattagagaacgacatcact
tcggtgttggatcacaccttctgcgtggagcataacgcctttgggaagttcctacaacat
gaactcaaacctaacggccgtaacattcctgttacggaggaaaacaagaaggaatatgtg
aggctttatgtgaactggaggtttatgcgaggaatagaagcccagtttctggctctccag
aagggatttagcgagctcatcccccaacatctcctaaaagctttcgaccataaagaactt
gagctgatcatcggcggtctgggtaaaatcgacctggccgactggaagagcaacacgcgc
ttgaagcactgtacgagcgagagcaacgtggtgcggtggttctggcaggcggtggaggcc
ttcagcgaggagaggagaggacgcctgctgcagtttgtcacaggctccacccgggtcccg
ttgcagggcttcaaagcactgcagggctctacaggttctgcaggaccaagactcttcacc
atccatttgatagacgccaacactgacaacctgcccaaagcgcacacgtgtttcaacaga
atcgacatcccgccctacgagtcttacgaaaaactttacgagaaactgctgactgctgtg
gaggagacctgcggctttgctgtggagtga
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