Syngnathus scovelli (Gulf pipefish): 125983142
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Entry
125983142 CDS
T08785
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv00260
Glycine, serine and threonine metabolism
sscv00630
Glyoxylate and dicarboxylate metabolism
sscv00670
One carbon pool by folate
sscv01100
Metabolic pathways
sscv01200
Carbon metabolism
sscv01230
Biosynthesis of amino acids
sscv01240
Biosynthesis of cofactors
sscv04981
Folate transport and metabolism
Module
sscv_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
125983142 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
125983142 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
125983142 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
125983142 (shmt1)
Enzymes [BR:
sscv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
125983142 (shmt1)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
E2_bind
Methyltr_RsmF_N
Motif
Other DBs
NCBI-GeneID:
125983142
NCBI-ProteinID:
XP_049600071
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Position
16:1171110..1174618
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AA seq
482 aa
AA seq
DB search
MSLTNGDNVTKEAWDSHNKMMLEPLSVNDAEVFSIIKKEKHRQTYGLELIASENFTSRAV
LEALGSCMNNKYSEGYPGQRYYGGTEHVDELERLCQKRALEAYGLDSDKWGVNVQPYSGS
PANFAVYTAIVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVNPETGYI
DYDRLQENARLFHPKLIIAGTSCYSRNLDYARMRQIANENGAYLMADMAHISGLVAAGVV
PSPFDCCDMVTTTTHKTLRGCRAGLIFFRKGVRSVDAKGKEILYNLESLINQAVFPGLQG
GPHNHAIAGVAVALKQAMTPEFKAYQMQVLVNCKALSAALVKHGYKIVTGGSDNHLILLD
LRNKGTDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRFGSPALTSRGLVEDDFRKVA
DFLHRGIELTLEVQRSLDPKATLKEFIQALAKEEKFQLRVNEIKAEVEAFAGHFPMPGLP
EL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaacaaatggcgacaatgtcaccaaggaagcgtgggactcgcacaacaagatg
atgctggaacctctgtctgtcaatgacgctgaggtcttctctattattaaaaaggagaag
cacaggcagacgtacggtctggagctgattgcctcggagaacttcaccagcagagctgtt
ctggaggctctggggtcttgtatgaacaacaagtactctgaaggctatcctggtcagaga
tactatggtggaactgagcatgttgatgagctggagagactctgccagaagagggcgctt
gaggcctacggtctggactctgacaaatggggcgtgaacgtgcagccatattcaggttct
cctgccaattttgctgtttacaccgccattgtggaaccgcatggtcgaatcatgggcctg
gaccttcctgatggaggtcacctgacacatggtttcatgactgaaaagaaaaaaatctcc
gcaacgtccatcttctttgagtccatgccgtacaaggtgaatcccgaaactggttacatc
gattatgatcgactgcaagaaaatgctcgcctcttccatcccaaactcatcattgcagga
acaagctgctactcccgtaacctcgactacgcccgtatgaggcagatcgccaacgagaac
ggcgcgtatctgatggccgacatggcgcacatcagcggactggtggccgccggagtcgtg
ccgtccccctttgactgctgtgacatggttaccacgacgacgcacaagacgctgcgcggc
tgcagagctggactgatattcttcaggaaaggtgtgcgcagcgtggacgccaaggggaaa
gagattctgtacaatcttgagtcgttaatcaatcaggccgtctttccggggctgcagggt
ggaccacacaaccacgccatcgcaggtgtcgccgtcgctctcaaacaagccatgacacca
gagttcaaagcttatcagatgcaggttcttgtcaactgcaaagctctctccgctgccctc
gttaagcacggctacaagattgtcactggtggttccgacaatcatctgatcctattggac
ctgcgcaacaaaggaaccgatggaggacgagctgagaaggttctggaagcttgcgccatt
gcttgtaataagaacacctgcccaggagacaaaagtgctttgcgccccagtggcctgagg
tttggctctccagctctgacctccagaggcttggtagaagatgacttcaggaaagtggca
gacttccttcacagaggtattgagctgaccttggaggtgcagagaagtctggatcctaag
gccactctaaaggagttcatccaggcattggccaaggaagaaaagttccagctgcgtgtg
aatgagatcaaggcagaagttgaagcttttgctggtcattttcccatgcctggcctccct
gagttataa
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