Syngnathus scovelli (Gulf pipefish): 125983312
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Entry
125983312 CDS
T08785
Name
(RefSeq) transportin-2 isoform X1
KO
K18727
transportin-2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125983312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125983312
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125983312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_2
HEAT_GCN1
TPR_IMB1
Vac14_Fab1_bd
TOR1L1_N
TPR_IPO5
HEAT_EF3_N
Arm
IBN_N
Cnd1
HEAT_MROH2B_C
Adaptin_N
TPR_DNAAF5
PDS5
MMS19_C
HEAT_GCN1_C
TPR_CAND1
Ltn1_1st
Dopey_N
UNC45-central
INTS7_N
VPS15-like_hel
TPR_TTI1_C
DUF3689
RTP1_C1
DUF2573
Motif
Other DBs
NCBI-GeneID:
125983312
NCBI-ProteinID:
XP_049600407
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All DBs
Position
16:complement(275107..284272)
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AA seq
891 aa
AA seq
DB search
MEWQPDEQGLQQVLQLLKDSQSPDTATQRAVQEKLEQLNQFPDFNNYLIFVLTRLKSEDE
PTRSLSGLILKNNVKAHYQNFPPTVADFIKRECVNNIGDPSPLIRATIGILITTISSKGE
LQSWPELLPQLCNLLNSEDYNTCEGSFGALQKICEDSSELLDSDALNRPLNIMIPKFLQF
FKHCNPKIRSHAIACVNQFIIGRAQALMNNIDTFIESLFALAADEDSEVRKNVCRALVML
LEVRIDRLIPHMHSIIQYMLQRTQDPDENVALEACEFWLTLAEQPICKEMLAGHLVQLTP
ILVNGMKYSEIDIILLKGDVEEDEAVPDSDQDIKPRFHKSRTVTLQHEGLEGGDSEDIED
DDDDDDDDDTLSDWNLRKCSAAALDVLANVFRDELLPHLLPLLKGLLFHPDWVVKESGIL
VLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDSYLK
PLMTELLKCILDSNKRVQEAACSAFATLEEEACTELVPYLSFILDTLVFAFGKYQHKNLL
ILYDAIGTLADSVGHHLNQPEYIQKLMPPLIAKWNELKDEDKDLFPLLECLSSVATALQS
GFLPYCEPVYQRCVTLVQKTLAQAMMYNQHPDQYEAPDKDFMIVALDLLSGLAEGLGSHV
EQLVARSNIMTLLFQCMQDTMPEVRQSSFALLGDLTKVCFMHVKPCIAEFMPILGLNLNP
EFISVCNNATWAIGEIAMQMGAEMQLYVGVVLPHLVEIINRPNTPKTLLENTAITIGRLG
YVCPQEVAPQLQHFIRPWCTSLRNIRDNEEKDSAFRGICVMIGVNPAGVVQDFIFFCDAV
ASWVNPKDDLRDMFYKILHGFKDQVGQDNWQQFSEQFPPLLKERLSACYGV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcagccagatgagcagggactccagcaggtcctccagctgcttaaggactcg
caatcacccgacacagcaacgcaaagagccgtccaagaaaaacttgaacaactgaaccag
ttccctgatttcaacaactatctcatctttgtccttacaagactcaaaagtgaagacgag
ccgacacgctctctcagcggtctgattctgaagaacaatgttaaggcccattaccagaac
ttcccgccaactgttgccgacttcatcaagcgggaatgcgtcaacaacattggcgacccc
tcgcccctcatccgcgccaccatcggcatcttgattacaacaatttcctccaagggagag
ctgcagtcgtggcctgagctcttgccccagctctgcaacctgctcaactcggaggactac
aatacatgcgagggctcgttcggagcactgcagaagatctgcgaggactcgtcggagctg
ctggacagcgacgctttgaacagaccgctcaacatcatgatacccaaattccttcagttc
ttcaagcactgcaaccccaaaattaggtcccacgccatagcttgtgtcaaccagttcatc
attggccgagcacaggccctcatgaacaacattgacaccttcatcgagagcctctttgcg
ctggcagcagacgaggactccgaagtcagaaagaacgtttgccgagctctggtcatgctt
ctggaggtccgcatcgatcggctcatcccccacatgcacagcatcatccagtacatgctg
cagcgcacacaagacccagatgagaacgtcgctctggaagcctgcgagttttggttgact
cttgcggagcagcccatctgcaaggagatgctggcaggacacctggtgcaactcacgccg
atcttggtgaatgggatgaagtattccgagatagatatcatactgttgaagggagacgtg
gaggaagacgaggccgtaccagacagcgatcaggacatcaagccacgtttccacaagtcg
cggacggtcaccttgcagcacgaaggcttagagggaggcgacagcgaggacatcgaagac
gacgacgacgacgatgatgacgacgacacgctgtctgactggaatctgcgaaagtgttcg
gcggcagcgttggacgtgcttgccaacgtgtttcgagatgagctactgccccacctgctg
ccgctcctcaagggtttgctcttccatcccgactgggtcgtcaaggaatccggcatcctc
gtactgggcgccatcgccgaaggctgcatgcaaggcatggtaccttacctgcccgagctc
atcccgcaccttatccagtgtctgagtgacaagaaggccctggtgcgctccatcgcctgc
tggaccctcagtcgttacgcgcattgggtggtctcccagccccccgactcctacctcaag
cccctcatgacggagcttcttaagtgcatcctggactccaacaagagggtccaagaagcc
gcctgcagcgcgtttgccaccttagaagaggaggcatgcacagagcttgtcccatattta
agcttcatcttggacacgctggtctttgcatttggaaagtaccagcacaagaatctcctc
atcctctacgatgccatcggaacacttgcagactcggtgggccaccaccttaatcagccc
gagtatattcaaaagctgatgccccctctcatcgcaaagtggaatgagctcaaggatgag
gacaaggatctttttcctcttttggagtgtttgtcttcagtcgccacggcacttcagagt
ggcttcctgccgtactgcgaacctgtttaccagcgttgcgtcacccttgtccagaagact
ttagctcaggctatgatgtacaaccagcacccagaccagtatgaggcccctgataaggat
ttcatgatcgtggccctggatctgctcagtggcctggctgaaggtctgggaagtcatgtg
gagcaactcgtagcccggtctaatatcatgacgctgcttttccagtgcatgcaggataca
atgccagaagtgaggcaaagctcctttgctctcttgggagatttgacaaaggtctgcttc
atgcatgtgaaaccttgcattgctgagtttatgcccatcctcggcctcaatctgaaccca
gagtttatttcggtgtgtaacaacgccacctgggccattggggaaattgccatgcaaatg
ggtgcagaaatgcagctttacgttggagtggttttgccccacctagtggagatcatcaat
cgacccaacacgccaaagaccctgctggaaaacacggccattacaataggcagactgggt
tatgtctgtcctcaggaagtggcgccgcagcttcaacatttcattaggccatggtgcaca
tcgctgaggaatatcagggataacgaagagaaagattcagccttccgtgggatctgcgtg
atgattggcgtcaacccggccggtgttgtgcaggacttcatcttcttttgtgatgctgtg
gcctcctgggtcaacccaaaggatgacctgagggacatgttttataagatcctgcacggc
ttcaaagaccaggtgggtcaagataactggcagcagttttcagagcagttccctccattg
ttgaaggagcgtctgtcggcatgctacggcgtctaa
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