KEGG   Syngnathus scovelli (Gulf pipefish): 125983340
Entry
125983340         CDS       T08785                                 
Symbol
rack1
Name
(RefSeq) small ribosomal subunit protein RACK1
  KO
K14753  guanine nucleotide-binding protein subunit beta-2-like 1 protein
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03010  Ribosome
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    125983340 (rack1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sscv03019]
    125983340 (rack1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sscv04147]
    125983340 (rack1)
Messenger RNA biogenesis [BR:sscv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     125983340 (rack1)
Exosome [BR:sscv04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   125983340 (rack1)
  Exosomal proteins of colorectal cancer cells
   125983340 (rack1)
  Exosomal proteins of bladder cancer cells
   125983340 (rack1)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40_Gbeta WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd EIF3I Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_DCAF4 eIF2A Beta-prop_WDR19_1st Beta-prop_NWD2_C Beta-prop_WDR75_2nd Tricorn_2nd Beta-prop_ACSF4 Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 125983340
NCBI-ProteinID: XP_049600456
LinkDB
Position
1:11395638..11398376
AA seq 317 aa
MTEQMTVRGTLKGHSGWVTQIATTPQYPDMILSASRDKSIIMWKLTRDETNYGIPQRSLK
GHSHFVSDVVISSDGQFALSGAWDSTLRLWDLTSGNTTRQFVGHTKDVLSVAFSADNRQI
VSGSRDKTIKLWNTLGVCKYTIQDEGHSEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLA
NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDSGATINALC
FSPNRYWLCAATGPSIKIWDLEGKIIVDELRQEVISTNSKAEPPQCTSLAWSADGQTLFA
GYTDNLIRVWQVTIGTR
NT seq 954 nt   +upstreamnt  +downstreamnt
atgaccgagcagatgacagtgagggggacccttaaggggcacagtggatgggtcacccaa
atcgccactacgcctcaatatcccgacatgattctgtcggcgtcccgagacaagtccatc
atcatgtggaagctgacccgtgatgagaccaactatggcatcccccagcgctccctgaag
ggccactcgcactttgttagcgacgttgtcatctcctccgatggacagtttgccctgtct
ggagcttgggattccaccctccgtctgtgggaccttaccagtggcaacaccacccgccag
tttgttggacacaccaaggatgtcctgagtgtggccttctctgccgataaccgccagatt
gtgtctggctctcgggacaagaccatcaagctgtggaacacgcttggtgtctgcaagtat
accatccaggatgaaggccactctgagtgggtgtcttgcgtgcgcttctcccccaacagc
agcaaccccataattgtgtcttgtggctgggacaagatggtcaaggtgtggaaccttgcc
aactgcaagctcaagaccaaccacatcggccacactggttacctgaacacggtgacagtc
tctcctgatggctccctttgtgcatctggtggaaaggatggtcaggccatgctgtgggac
ctgaatgagggcaagcacctctacactctcgacagtggtgccaccatcaacgccctgtgc
ttcagccccaaccgttactggctgtgcgccgccaccggtcccagtatcaagatctgggat
ctggaaggcaagattattgtggatgagctgagacaggaggtgatcagcacgaacagcaag
gccgaacccccacagtgcacctccctggcctggtctgcagatggacagaccctgtttgct
ggctacactgacaacctgatcagagtgtggcaggttactattggaacccgataa

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