Syngnathus scovelli (Gulf pipefish): 125983510
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Entry
125983510 CDS
T08785
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
sscv04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125983510 (cacna1ha)
04020 Calcium signaling pathway
125983510 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125983510 (cacna1ha)
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
125983510 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
125983510
NCBI-ProteinID:
XP_049600747
LinkDB
All DBs
Position
16:3824097..3883092
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AA seq
2465 aa
AA seq
DB search
MTDGDGRVHIQHADSQEEQEQEEVLEEVKCHQNDVEQPGGLGDDERMGHTASCSRSRRND
ERETKVQEAELEEDGGPALDVRIVAPIRDPDCVSEEEEQQVYPALAPMAFFCLRQTTRPR
NWCLRVVCNPWFEHVSMLVILLNCVTLGMYQPCEDLTCLSEWCRILKALDDCIFAFFAVE
MIIKMVALGIFGNNCYLGDKWNQLDFVIVMAGVLEYSLDGHNATFSAIRTVRVLRPLRAI
NRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLDADIKEKY
NLDISPYYMTNDGEDNPFICSAPRDHGMLRCHDIPAKTEANAECQLPALDQSSNPIGGTP
TLGGDDGKGCVNWNQYYNVCRAGEYNPLKGAVNFDNIGYAWIAIFQVITLEGWVDIMYYV
MDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENALMREQRARFMSNDSTL
ASYTEPGSCYEEMLRYISHLYRKLSRRLQRIYSGWHSKRRKKVNPNGNGGGGNSAGNAHG
HGSGRAPAPSSALWLRPIHNLLQHHQHQHCSHPNGGQHTSSVETTEHLAEKGGATELEMK
SLPVSKGSRNGNSSGGNQLAVTQGMGTTLRRVNGGMNYPTILPSFVCSYSSKTPPPHAQQ
GGSGPDQHPPNHSTTEQTEKLNKLYQLVGQHGHQSLLYQLAGVIPSPLLLELLSCPLCAR
SLETLELQLGDSDCKGEPDGLHDYPQGDLRCCRGRGRRPGPPQFKNRALRAWMKFKEKLK
KIVESKYFNRGIMIAILVNTLSMGIEYHEQPKELTDVLEISNIVFTSMFVLEMGFMILAF
GPFGYIRNPYNIFDSIIVIISVWEIIAQAGGGLSVLRTFRLLRVLKLVRFLPALRRQLVV
LMKTMDNVATFCMLLMLFIFTFSILGMHLFGCKFSLQTDDGDTIPDRKNFDTLLWAIVTV
FQILTQEDWNMVLYNGMASTTPWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRS
ESDDDKKSDNFEEDEKVEQLRDTELKMYTLMMTANGHADPRGSMAPPIIMRTAATPMPTP
KSSLGLESYLEDDVMAAEGVLQHGEVGPPENIHRESRRGSATSMDALTCDQRSLSHFSPA
RRSPLLPRGSSSWGSRRSSWNSLGRAPSLKRRDTSGERESLLSGERGEEEEGVDDNDDAG
GYDNRIQPDPLELLQASTLCPAVGVQYGDCNGGNMTHNSNLNVHTKEDSLPEDDTDYEPS
FCCMIKKEFLNMKPRWCKEHEEWTLYLFSPENSFRVWCQSVISHKMFDHVVLVFIFLNCI
TIALERPNIQPHSNERMFLKVSNYVFTVIFLAEMTIKVVALGFCFGKQTYLQSSWNILDG
MLVFVSLVDILVSLAYSGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRP
IGNIVLICCAFFIVFGILGVQLFKGKFFHCEGPNTKNITTKSDCLLANYSWKRRKYNFDN
LIQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLIYFISFLLIVSFFVLNM
FVGVVVENFHKCRQDQEEEEARLREEKRLKIIEKKRRSKEKEGAEAKQRPYYADYSIQRL
TIHRLCTSNYLDLFITFIICVNVFTMSIEHYNQPQYLVVVLKYCNYLFTCIFIIEALLKL
MAFGIHRFFKDRWNQLDIAIVALSIMGIILEELKMSASLPINPTIIRIMRVLRIARVLKL
LKMATGMRSLLDTVMQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNDHNPCEGLSRH
ATFENFGMAFLTLFRVSTGDNWNGIMKDTLRECLPEELHCLSYLPLISPIYFVTFVLMAQ
FVLVNVVVAVLMKHLEESNKDAKEDAEMDAEIAMEMEMEKKRGSSISSHSSNPGTFVGPC
PPQSPGQDEVVKCSEDALQVSDKMSVSRMHSLPNDSYMFRPVRPASAPYPLEEVDVSAQE
QHSGSLTSVHSQPCESRTLLQVPDVSPVHPRLLPSVNLPRIAPPTPHPSPRPLRRQVAVN
VDSVEVQTCEQQERATPVHFPLPPPLSHSPRSPAPSPLPPLPPSSPSTLSRPPSSPSPFP
LPSVSPSPLPPIISSSLPPPPSSPSLLLPPPRSPRFPLRSASLHRPRPPSAASLFDPADE
EVCHITNLARHRQIAELEGGQESGARAGRSHSLSPYTDSTSSPPPSLLPRPSSRSPHGAE
SIDRDFRKGFNVDPQASLLSAGYLEEHRRHSIAVCLPQDGIPGDEQNSEFHKGKGNFPMR
VQSVGGGHRKKKTSPPCISVHPPSEKENPPSPPKLADCSMMLRRRTPSYDLRQDVEPHSP
IHRALTPVQLQTPTRSLTPSPSSTPAYTPPLPSTPTHPPIPISPNIFIQPHAPLVPRPFV
QTRPISPAARRSALARDCIPLPQFTFDQPQSRCLSDADPAPCASPFDNKLGTGAGFTAKN
RRTAQ
NT seq
7398 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgacgggagagtgcacattcagcatgcagatagccaagaggagcaggaa
caagaggaggtcttggaggaggtgaaatgccaccagaacgatgtagaacaacccggaggc
ctcggtgatgacgagcgcatggggcacactgctagctgtagtaggtcgaggaggaatgat
gaaagagaaactaaagttcaggaagctgagttggaagaggatggcgggccggcgctggat
gttcgcatcgtggctcccatacgggatccggactgcgtctcggaggaggaggagcagcag
gtgtacccggccctggcccccatggccttcttctgcttaaggcaaaccacacggcctcgc
aactggtgtcttcgtgtcgtgtgtaacccgtggttcgagcacgtgtccatgttggtgatc
ctcctcaactgcgtcaccttggggatgtatcaaccctgtgaagatctcacctgcttgtca
gagtggtgtcgcatactcaaggcattggacgactgtatatttgctttctttgcggtggaa
atgattatcaagatggtggccctggggatttttggcaacaactgttaccttggcgacaag
tggaaccagctggactttgtcatcgtcatggcgggtgtgttggagtactctctggatgga
cataatgccactttctcggctattcgtaccgttcgagtactgagacctctacgggccatc
aacagagtcccaagtatgcggatcttggtgacgctgttgttggacaccctaccgatgttg
ggaaatgtccttctcctctgcttctttgtctttttcatctttgggattgttggagtccag
ctgtgggcggggcttctgcgaaaccgctgcttcctggacgctgatattaaagaaaaatac
aatttggatatcagtccctactacatgacaaacgatggcgaagacaacccatttatctgc
tcggcacctcgtgaccacggcatgcttcgctgccatgacattccggccaaaaccgaggcc
aacgccgagtgccagttaccggcgctggaccaaagttcaaatccgattggagggacccct
actttgggaggggacgatggaaagggatgtgttaattggaaccagtactacaacgtgtgt
cgcgctggggagtacaaccctctcaaaggagctgtcaactttgacaacatcggctatgct
tggattgctattttccaggtcatcacactggaaggatgggtggatatcatgtattatgtc
atggatgctcattcattctacaattttatatattttatacttctcattattgtgggatct
ttcttcatgatcaacttgtgcctcgtggtcatcgccacccagttctccgagacaaagcaa
cgggagaacgctctcatgcgggaacagcgtgctcgcttcatgtccaatgattccacgctt
gccagttacacagaaccgggttcatgctatgaagagatgctacgctacattagccacctt
taccgcaagttgtcacgaagactacagaggatatactctggatggcacagtaaacgacgt
aaaaaggtgaatcctaacggcaatggcggcggcggcaatagcgctggtaacgcacacggc
cacggctctggcagggccccggctccgagtagcgctttgtggttgaggccgatacacaac
ctgctgcagcaccatcagcaccagcactgttctcaccccaacggggggcagcacacgagc
agcgtggagaccacggaacatttagccgaaaaaggaggagccacggaactggagatgaag
tcacttcctgttagtaaaggaagtcggaatggaaatagcagtggtggcaatcagttggct
gtcacccaaggcatggggaccacgctcaggagagtcaacggagggatgaactacccgacc
attctgccatcgtttgtgtgcagctacagcagtaagacaccgccgcctcacgcccagcaa
ggtggaagcggtccagatcagcacccgccaaaccactcgacaaccgaacaaacggaaaaa
ctcaacaaactctaccagcttgtcggacaacacggtcaccagagtttgctgtaccagctg
gcaggggtaattccgagtccactcctcctggaacttctgagctgccctctctgtgcacgc
agtctggagaccttggaactgcagttgggcgactcggattgcaagggagaacccgatgga
ctgcacgactacccccagggagatctgagatgctgcagaggtcggggcagacgacctggg
cctccgcagttcaagaacagagcacttcgggcgtggatgaagttcaaggagaaactgaag
aaaatagtggagagcaagtacttcaaccgaggaatcatgattgccatcctcgtcaatact
ctcagtatggggatagagtaccatgagcagccgaaggagttgacggatgttctcgagatc
agcaacattgtcttcaccagcatgtttgttttggaaatgggattcatgattttggctttt
ggcccctttggatacatccgaaatccttataatatatttgacagcatcattgttatcatc
agcgtgtgggagataattgctcaagcgggcggcgggttatcagtcctgcgtactttccgc
ctgcttcgagttctcaagttggttcgcttccttcctgcgttgaggagacaacttgtagtc
ctgatgaagacgatggataatgtggcaaccttctgcatgctcttgatgctcttcatcttc
acatttagcatactgggaatgcatctgtttggttgcaaattcagcctccagacagatgat
ggcgacaccattcctgatcgcaagaactttgacactctgttgtgggcaattgttactgta
tttcagatattaacccaggaggactggaacatggtgttgtataacggcatggcatccacc
accccatgggcggctctctactttgttgcactgatgacatttgggaactatgtgcttttc
aacttgctggtggccatcttggttgagggctttcaggctgagggtgatgcaaatcgctcc
gagtcagatgatgacaaaaaatctgacaactttgaagaggatgagaaagtagagcaactc
cgagacacggaactgaaaatgtacacgctgatgatgacggccaacggtcatgccgatcca
cgcggttcgatggctcctcccataattatgcgaacagcggcgacacccatgcctactccg
aaaagctctttaggtttggagtcctacctggaggatgatgtcatggctgcagaaggagtt
ctgcaacatggagaggtcggaccacctgaaaacatccaccgagagtctcgccgtggaagt
gccacctccatggatgctttaacgtgtgatcagagatctttgagccatttcagtccagca
cgccgctcccctctccttccacgcggatccagctcatgggggagccgtcggtccagctgg
aatagcctgggaagagcaccgagcctcaaaaggcgagacactagcggagaacgagagagt
ctattgtccggagagagaggagaggaggaagagggtgtggatgacaatgacgacgctggc
gggtacgacaacaggatccagccggatccattggaactgctacaagcgtccactctctgc
ccggccgtcggggtccaatatggcgactgtaatggcgggaacatgactcataattctaat
ttgaacgttcacaccaaagaagactccttgcctgaagatgacactgattatgagccttcc
ttttgctgcatgatcaagaaagagttcctcaacatgaaacctcgctggtgcaaagaacac
gaagaatggacgttgtacttgttttcgccagagaactcatttcgtgtgtggtgccaaagt
gtgatctctcacaaaatgtttgaccatgtggttctggttttcatcttcctcaactgcatt
actattgctctggaaagacctaatatacagccacacagcaatgaacggatgtttctcaaa
gtgtccaactatgttttcactgtgatcttcctagcagaaatgaccatcaaggtggtagcg
ctcgggttctgctttgggaagcagacctaccttcagtccagttggaacattctggatggt
atgttggtgtttgtgtctctcgtcgacattctggtctctctggcatattctggtgggaac
cggatcctgggcatcctccgagttttacgcttgctacgcacattgcgcccactcagagtg
atcagtcgggcaccaggattaaaattagttgtggagaccctcatcacttctcttcggcct
atcggcaacattgtcctgatctgctgcgctttcttcattgtgtttggcatcttgggagtg
cagcttttcaaagggaaattcttccactgtgaaggtcctaacaccaaaaacattaccact
aaatccgactgcctgctagccaactacagctggaaacgaaggaagtacaactttgacaac
ctgattcaggctttgatgtctttgtttgtcctgtcatgtaaagacggctgggtcaatatt
atgtatgacggcctggacgcggtaggagtggaccaacagcctgtgaggaaccacaaccca
tggatgctgatctacttcatctcctttctgctcatcgtcagcttttttgtcctcaacatg
ttcgtgggcgtggtggtggagaatttccacaagtgtcgacaggaccaggaagaagaggag
gcccgtttacgggaagagaagaggctcaaaatcatagaaaaaaagcgcaggagtaaggag
aaggaaggggctgaagccaaacaaaggccctactatgcggattactccatccagcgtttg
actatccatagactgtgcaccagtaactacctggacctctttattaccttcatcatatgc
gtcaatgtgttcaccatgagtatcgagcactacaatcaaccccagtatttggtggtggtt
ttgaagtactgtaactacctgtttacctgcatcttcatcatcgaggctcttcttaaactt
atggcgtttgggatacatcgatttttcaaagacaggtggaaccagctggatattgctatt
gtggctttatccatcatgggtatcattctggaggagctgaaaatgagtgcatctcttcct
ataaatccgaccatcatccgaattatgagagtgctcaggatagcacgagtacttaaactc
cttaagatggccacaggcatgagatctctactggacactgtcatgcaagctctgccacag
gtgggaaatcttggtctcctcttcatgctgcttttcttcatctatgccgccctgggagtg
gagctctttggcaagcttgagtgtaacgaccacaatccctgtgagggtctgagccgtcat
gctacctttgaaaattttgggatggccttccttacgctttttcgcgtatccacgggagac
aactggaatggcattatgaaagacacactgcgagaatgtcttccagaggagcttcactgt
ctctcctacctgccgttgatctctcccatatattttgtcaccttcgtactcatggcccag
tttgtactggttaatgtggtggtggccgtgctgatgaagcatctagaagaaagcaacaag
gacgcaaaagaggatgcagaaatggatgcagaaattgccatggaaatggagatggagaag
aaacgtggttcgagcatttcttcccacagctcaaatccagggacctttgttgggccatgt
ccaccacaatctcctggccaggatgaagtggtgaagtgcagtgaggatgcgctccaagtt
tctgacaagatgtccgtatccaggatgcactctctgcctaacgacagctacatgttccga
cctgtgagacctgctagtgctccttaccccctcgaagaggtggatgtcagtgctcaggag
caacattcaggctctctgacttcagtccattcacagccgtgtgagagtcgcactctgctg
caggttcctgacgtttcccccgttcacccgcggctgctaccttccgtcaacctgcctcgc
atcgccccgcccacgccgcacccctcccctcggcccctacgcagacaggttgcagttaat
gtggattctgtggaagtccaaacttgtgagcaacaagagagggcgacccctgtccatttt
cctctgccgccccccttatcgcattctccccgtagccctgccccatctcccctgcctcct
ctccctccctcctccccctcgactctttcccgcccaccctcctccccttctccattccca
ctcccttcagtgtctccttctcctctcccacctataatctcatcctccctccctcctcca
ccgtcctctccctcgcttcttctccctccgcctcgctctccacgcttcccattacgcagc
gccagcctccaccggcccagaccgccctccgccgcctccctctttgacccggctgatgag
gaggtgtgtcacatcaccaacttggcccgccaccgacagattgctgaactggaaggcgga
caggagagcggagcgagagcaggtcgaagccattccctctctccgtacaccgactccacc
tcgtcgcctcctccctctttattaccgcgaccgtcctccaggagcccgcatggagcggaa
tccatagaccgggactttaggaaaggcttcaacgtggatcctcaggcgtcgttattgtcc
gccggttaccttgaggaacatcggcgccactccatcgcggtgtgcctcccgcaagacggc
atccccggtgatgagcaaaactctgagttccacaaaggaaagggcaatttcccgatgagg
gtgcaatcagtcggaggtggacaccgtaaaaagaagaccagccccccttgcatatcggtc
cacccgccttcagagaaggagaacccgccctcgcccccgaaactggccgactgcagcatg
atgctgagacgaaggacgccgtcttacgacttacgacaagacgtcgagccgcactcaccc
atacatcgggcgctcacgcccgtccaactccaaacgccgacacgctcgctcacaccctcg
ccgagctccacgcccgcatacactccaccgctcccgtcaacccccacgcacccccccatc
cccatcagccccaacatcttcatccagcctcacgcacctctcgtcccgagacctttcgta
cagacacgccccatttcgcccgccgccaggcgctccgcccttgcaagggactgcatcccc
ttaccccaattcacttttgaccaaccacaatccagatgcttgtcggacgcagatcctgcg
ccgtgcgcgtcaccttttgacaacaaactgggaaccggtgctggattcaccgcaaagaac
cggaggaccgcccaatga
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integrated database retrieval system
