Syngnathus scovelli (Gulf pipefish): 125983513
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Entry
125983513 CDS
T08785
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125983513
03036 Chromosome and associated proteins [BR:
sscv03036
]
125983513
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125983513
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125983513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
125983513
NCBI-ProteinID:
XP_049600755
LinkDB
All DBs
Position
16:4124594..4146881
Genome browser
AA seq
1853 aa
AA seq
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MAPIRDSVSHSPNQTGLEHPGLDSQYEPSPWSSGSPCSGDSNSSWGKVLVDGSTDKANNP
TSTSSSVWPPSSSSFSCSSSSSSSGCGSGSDPELASECMDADSSPSTGSENNFAALAATT
GMMSANASSAESPSTFAPSSDMMVGVSMNGDSNGNSCQVNGGGVGTICGAKNGNSNITGH
PHFSVAGSSGLGSNNLGNHNKLVNSVWGTQSGNTMMASSESSSSIIGGLTPPNANHGAWP
QNPTLGPQRPLQPQGMNSKLGIAPQQGPLMGWGGMAAPDKSSMMEDMEVNNGTSSSNVLG
GSSSGNGGPPPANFNTEPNGPNNTMTMNTTTTSTITTTNTTMTSAPPNSIASPQLSGECS
WGSIGGAGHGGLLPNGNTSSAPQRPHGEMAGPGTFGTPWDASTYSGEKGPPNSDTVNPQA
PALMQAGNSQMSTTAAVKSNNNNHHGAGGSRWDQGPASNPNPSQSNNPWGLSTNQTPASA
GQIPGTVNQTSMSSSLGVPRPWGSSASSSSSSSSSSTSNKLPNGEWGTTHGNNHSEAESQ
KGGAANNGWKSLEDDAIGMGGGGPGSATLVGVSGGWGRSGGSEGSGESSGGQSGSDRENV
LSKGGNRRKVNNPATIVALPSRTDVDPRVLSNTGWGQTPIQQNTAWDVSSINKQPLALRG
DERKQRSGWGTATPSQSAPSQTSGGTGWGDGPGSASTDTGSSGWGEPQSNSGWDNRGQGS
GWDNGSSYKGGNNNNSKDDRSNTWTNAPKQQQGWSSSSGNEDEGWGQGGDSSRAVSNNHW
GDPHKSAGSVGWDSDSDRSGSGCWSEPGRTNTSSSNTWGGSGGSNTPDQSTPTPGSNWGD
SKPSHQNKSQGWGEPVKNNQVSQNWGDSNSKPSYTSNEWGKGPDSNMSRANNKPTGWLGG
PMPTVGQKNEAATGWEEPSPESVRRRMEIDDGTAAWGDPVKYHGGAVNMWNRTSQSDQDN
VGPSSQHQSHASHSSTHPSQSMQSHGQDKGGNSGWGEAYPQQKESSTWGEPSSTPPVTVD
NGTSAWGKPADTRSSWNEPSRDNREPASGWGGRHKSGLGSKPMDTWRGDDSMGNSWDQEE
EVEIGMWTNNQQDNRSHDQNTWNYKHKGSFKMNKPVNKPDEPWMKPFMNQFNNMNFSRDS
PDDSMKTGAGMVQDKRMDSMDFGGVMGKNAGSQHQLSKDSPMDRSSYYDKLSAPLSASAE
RCSSQSMSFSPPASTQPILCHDSGPSPAHSNPGVSRQNVNPMLGGNSLAQGRGGMQSQLP
HPNFRNQVPPPIMPSQVPPPLLKYPGGTGALNPLLGPQQVAVLNQLSQLNQLTQLQRLIL
LQQQQQQQQQQQQKAQNQRVMPVGRPSEQTRPIGSSPSMIQPPRHLDASLLKQSPAFKPY
LDSYSPDMVKDTSTIGSFSNFPLSLNPNLNVSLDMGVGTNAGGALSYKEPPQSRLKKLWV
ADPLEQNSKSGAISSGLRLEDSPLYDFLSPGPSPLSPPGQSMGSVGDVWPPRANSPPPHG
NTVTWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVRDTDHLRDRNNGPSSSL
NTTMPSNSAWSSIRASSHSGSLTSTAQSTSARPSESKWSPGIGSVSNSSLAHELWKVPLP
PKALSVAAPSRPPPGLTGQKPNSASSGWDGSALRLGGWGSTDSTYAPGSSWGDSNSSGRT
QWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCV
LGNTTILAKFASEEEISRFFAQGQSLATPSSGWQAIGSSQSRMDQSHAFPSRAAEPSQWN
SGDLHGSSLWGGPNYSSSLWGSPSGTEAGRIGSPSPIGSFLPVDHLAGAGDSM
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggattccgtcagccattcccctaatcaaacaggcctggaacaccct
ggcttggactcgcagtatgagccctctccctggtcttctggctctccctgcagcggtgac
agcaacagcagttggggaaaggtcctagtggacggaagcacagataaagccaacaacccc
acctcgactagttcttctgtctggcccccgtcatcgtcttctttctcttgttcctcctcg
tcgtcctcttccggctgcgggtcaggatccgaccccgagttggcgtcagaatgcatggat
gcggactcgagcccgtcgaccggctccgagaataactttgcggcgctcgccgcgacgacc
gggatgatgtcagcaaacgcgtcttccgccgagtctccgtcgacgttcgcgccttcctcc
gacatgatggtcggcgtttcgatgaacggagacagcaacggcaatagttgtcaggttaac
ggcggaggcgtcggaacaatctgtggtgcaaaaaatggaaatagcaacattactggacac
cctcacttctctgtggccgggtccagcggtcttggcagcaataacttgggtaaccataac
aagcttgttaacagtgtttggggcactcagtcaggcaacaccatgatggcttccagcgaa
agcagcagcagcatcatcggaggcttgactcccccaaatgccaaccatggtgcctggcca
caaaatccaaccctgggcccccaacgtcctctccagcctcaggggatgaattccaaattg
ggtatcgctccccagcaaggccccttgatgggatggggtggcatggcagctcccgacaaa
agcagtatgatggaagacatggaggtgaataatggtacatcaagcagcaatgtgttagga
ggcagcagcagtggaaatggtggaccgccgcccgccaactttaacactgaacccaacgga
ccaaataacactatgacgatgaatactactactacttctactattactactactaacacg
acaatgacctccgctccaccaaactctatcgcctcgcctcaactgagcggcgaatgctcc
tggggctccatcggaggagcagggcatggtggtctgctgcccaacggaaacacttcatcc
gccccccagcgcccccacggagagatggcgggtcccggaacctttggtacgccttgggat
gcatctacctactctggagagaagggtcccccaaattcagacactgtgaacccacaagcc
cctgccttaatgcaggctggcaattcccaaatgtccactactgctgctgttaagagtaat
aataacaaccaccatggcgccgggggttcacgctgggatcaggggcctgccagtaaccca
aatccgagtcagagcaacaacccctggggtctaagtacaaatcaaaccccggcctccgca
ggacaaatcccagggactgtgaaccaaacgtcaatgagctcttctttaggggtacctcgc
ccttggggaagcagcgcatcatcttcctcctcctcgtcctcctcgtccacgtctaacaag
ctgccgaacggagagtggggaacaacccacgggaacaaccattcggaggctgaaagtcaa
aaaggaggtgctgctaacaatggctggaagagcctggaggacgatgccataggcatgggt
ggcggagggcctggtagcgcaaccctggttggggtatcagggggctggggccgctctgga
ggaagcgagggaagcggcgagagctccggaggccagtccggctcggaccgagagaacgtc
ctgtcgaaaggagggaatcgaagaaaagtcaacaatccggcaacaatcgtcgccttaccg
agtcgaaccgatgtggacccgagggtcctatcgaataccgggtggggacaaacgcccata
cagcagaatactgcttgggatgtgagttccatcaacaagcagccactggctctcagagga
gatgaaagaaaacaacgctccggctggggaacagcaacaccctcacagtccgctccgagc
cagacctctgggggtacaggttggggtgatggtccaggttctgcgagcacagatactgga
agctctggttggggcgagccacaatcaaactccgggtgggataaccgaggccagggaagt
ggctgggataatggatccagttacaaagggggcaacaacaacaacagtaaagatgacaga
tccaatacatggacaaatgcacctaaacagcagcagggctggagttccagcagtggcaat
gaggatgaaggctggggtcaaggtggagatagttccagagcagtgtctaacaaccactgg
ggagatccccacaaaagtgccgggtcagtaggctgggacagcgacagcgaccgatcaggt
tccggatgctggagcgagccggggagaaccaacaccagcagcagcaacacctggggagga
agcggagggtcaaatactccagaccagagtactcccacccctggctccaactggggcgac
tccaaacccagtcatcaaaataaaagccaagggtggggagagccagtgaagaacaaccag
gtttcccagaactggggcgactccaattctaagccctcgtatacttccaacgagtgggga
aaaggtccagactccaatatgtcaagggccaacaacaagccgacgggctggttgggaggt
cccatgcccacagtgggtcaaaagaacgaggccgcaactgggtgggaggagccgtctcca
gaatccgttcgccgacggatggagattgatgatggaaccgcagcttggggagaccctgtg
aaataccacggcggcgctgtcaacatgtggaaccgaacgagccaatcagaccaggacaat
gttgggccatcttctcaacaccaatctcacgcatcacatagctcgacacatccttcgcag
tccatgcagtctcatgggcaagataaaggtggcaattcaggctggggtgaggcatatcct
cagcagaaagagtcctcaacatggggtgaacccagctcgactccgcccgtgacagtggac
aatgggacatctgcctgggggaagccagcggacactcgctcgagttggaatgaacccagt
cgggataatagagaacctgcatctggttggggaggtcgtcataagtctggtcttggttcc
aaaccgatggacacatggcgcggggatgactctatgggtaacagttgggaccaggaagag
gaggtagagattggcatgtggacgaacaaccagcaggataaccgatcacatgaccaaaac
acctggaactacaagcataagggatccttcaagatgaataaacctgtaaacaaaccagac
gagccgtggatgaaaccgttcatgaaccagttcaacaacatgaacttttcacgagactct
cctgatgactccatgaaaactggagcaggtatggtacaagacaagcgcatggattcgatg
gattttgggggagtcatggggaagaatgccgggtcccaacaccagctctccaaagactcg
cccatggatcgcagttcttactatgacaagctgtccgctcccctctccgcttcagccgag
cgctgctccagtcaaagcatgagcttttcccctcccgcttccactcagcctatcctatgt
cacgactccgggccatctcccgcccactctaaccctggcgtctctcggcagaatgtaaac
ccaatgctgggtggcaacagcttagcacagggccgcggtgggatgcagtctcaactccct
catcccaatttccggaatcaagtgcctcctcccatcatgccctctcaggtccctccaccc
ctgttaaaatacccaggtggcactggagccctgaaccctctgttaggccctcagcaggtg
gctgtgcttaaccagctctcccaactcaaccagctgacccagctgcagcgtcttattctt
ctccagcagcagcagcaacaacagcagcagcagcaacagaaggcccagaaccagagagtg
atgcccgtgggacgaccgtctgagcagactcgcccaatcggttcatctccatcaatgatt
cagcctccacgtcacctggacgcttctttgctgaagcagtccccagcctttaaaccatac
ttggatagctacagccctgacatggtgaaggatacttccacaattggatccttcagcaac
ttccctttaagcttgaaccctaacctgaatgtatccctggacatgggtgttgggactaat
gctggcggagctttaagctacaaagaaccgccccagtccaggctgaagaaactgtgggtt
gccgaccctctggagcagaacagcaaatctggtgctatttcgtcagggctgcgtctggag
gactctcccttatatgacttcctgtcccccggcccatctcccctgagtcctcccggccaa
tcaatgggctcagtgggtgacgtctggccgccccgtgccaattccccgccaccccatgga
aacactgtcacctggcccccagagttccgacccggtgaaccttggaaaggttaccccaac
attgatcctgaaactgacccttacgtgacccccggtagtgtcattaataacctctccatc
aacaccgtccgtgacacagaccacctcagggacaggaacaatgggccatcctcatcactg
aacaccacgatgccttctaacagtgcctggtcatccattcgtgcctccagccacagcggt
tccctcaccagtacagcacaaagcacttcagccagacccagtgagtcaaaatggtctccc
ggcattggttctgtatcaaactcctctctggcccatgagctgtggaaggtccccctgcct
cccaaggcgctgtccgtggcggccccctccagacctccacctggcctcaccggtcagaag
cccaactcggcctcctccggctgggatggctcggccctgaggctgggtgggtgggggtcc
actgactccacatacgcacctggctccagttggggtgacagcaacagctcagggagaacc
caatggcttgttctgaaaaacctcacacctcagattgacggctctacgctgaggactctg
tgcatgcagcatggccctctgatcacattccacctcaacctgccgcacggtaacgctgtg
gtgtgctacagctccaaggatgaggcagccaaggcccagaagagcctgcacatgtgtgtt
ttggggaacacgactattctggccaagttcgccagcgaggaggaaatcagccgcttcttt
gcacaagggcagtcactggccacgccctcctcgggctggcaggccatcggctcgtctcag
agccgaatggatcagtcgcacgcttttcccagccgcgccgccgagcccagccaatggaac
agcggcgatctccacggctcctccctgtggggcgggcccaattattccagtagcctgtgg
gggagccccagcggcacggaggcgggaaggatcggcagcccttctccaatcggctccttc
ctcccggtggatcacctggccggcgccggggactccatgtga
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