Syngnathus scovelli (Gulf pipefish): 125983592
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Entry
125983592 CDS
T08785
Symbol
gabra4
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-4 isoform X1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04080
Neuroactive ligand-receptor interaction
sscv04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125983592 (gabra4)
04082 Neuroactive ligand signaling
125983592 (gabra4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125983592 (gabra4)
Ion channels [BR:
sscv04040
]
Ligand-gated channels
GABA-A
125983592 (gabra4)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
125983592
NCBI-ProteinID:
XP_049600925
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Position
1:21089565..21101212
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AA seq
557 aa
AA seq
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MLSANTKALATTMHPVFMTLLYFFSLATCVKNTTGQTKKDERIYPGNFTRILDRLLDGYD
NRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWVDRRLMYEGPIEILRLN
NLMVTKVWTPDTFFRNGKKSVAHNMTAPNKLFRIMKNGTILYTMRLTISAECPMKLVDFP
MDGHACPLKFGSYAYPKTEMIYTWTKGPEHSVEVPPESSSLVQYDLIGQTVSSETIKSIT
GEYVVMTVFFHLKRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMT
TLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFNAQLERAKKKPAKCPPV
PQTTPVKVKDTEEVLQQNPDTNGNLRKRMNYICHQDLRNHQRAQSTSNISGVGRARPPRP
LNSGVNSSSPTLSRSSPKSESVLSVASSSEVKQLVKNTPLAASSTPDVTVGTPCKTQNAA
AASLQHLLGPKLERLQMMGNKAELKQTPCSQPSAAGMGGTSKIDKYARILFPVSFGAFNM
VYWVVYLSKDTMVAKGG
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgctttctgccaatacaaaggcgctggcgacgacgatgcaccccgtttttatgactctc
ttatactttttctctttggcgacttgtgttaagaacaccacaggacagacaaagaaggat
gaaaggatctatccggggaattttacgcggattttagaccgacttctagacggttacgat
aacagactgagacctggattcggaggtcccgtgaccgaggtcaagacagacatttatgtg
acaagttttggtcctgtctcagatgttgaaatggaatacacaatggacgtgttctttcgt
cagacgtgggtggaccgcaggttgatgtatgagggtccgattgagattttaaggctgaat
aacttgatggtgaccaaagtttggacgccagacacgttcttcaggaacggcaagaagtca
gtggcccacaacatgacggcgcccaacaaattgttccggatcatgaagaacgggaccatt
ctctacaccatgagattgacaatcagtgcagaatgtcccatgaagcttgtggacttccct
atggacggacatgcgtgccccctcaagtttggaagctatgcctatcccaaaacagagatg
atctatacttggaccaaagggcccgagcactccgtggaggtccctcccgagtcgtcaagc
ttggttcagtacgatctcatcggccagacggtctccagtgaaaccattaaatccatcaca
ggtgaatatgtggtgatgacggtcttcttccacttgaaacggaaaatgggctacttcatg
attcagacgtatatcccttgcataatgacagtaatcctctcccaagtgtccttctggata
aataaagagtcggtcccggcgcgcacagttttcggcatcaccacggtgctgaccatgacg
actctcagcatcagcgctcgccactccctccccaaggtgtcgtacgccacggccatggat
tggtttattgcggtctgcttcgccttcgttttctctgccctcatcgagtttgctgctgtc
aactacttcaacgcgcagctcgagcgggctaaaaagaaaccggccaaatgcccgcctgta
cctcaaaccacgccagtcaaggtcaaggacacggaggaggtgctgcagcaaaacccagac
accaacggtaacctgaggaagcgcatgaattacatttgccaccaagacttgcgcaatcac
cagcgagcccagtccacgagcaacatttcaggagtggggcgagcccgaccgccgagacct
ttaaacagcggcgtcaacagcagctcgcccaccctctcccgctccagccccaaatccgag
agcgtgctcagcgtggcttcgtcgtcggaagtcaaacagcttgtgaaaaacacgcccctg
gcagcgtcatccacgccagacgtgacggtagggacgccgtgcaagacgcaaaacgccgcc
gccgcttccttgcagcatctgctggggcccaaactggagcgcctccagatgatggggaac
aaagcggagctcaaacaaactccgtgctcccagcccagcgctgccgggatgggcggaacc
agcaaaattgacaagtatgcacggatcctctttccagtgtcctttggagcatttaacatg
gtttactgggtggtttacttatccaaggacaccatggtggccaaaggaggctag
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