Syngnathus scovelli (Gulf pipefish): 125983777
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Entry
125983777 CDS
T08785
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
SAM_1
Ank_4
Ank_3
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
FERM_f0
SH3_9
SH3_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
125983777
NCBI-ProteinID:
XP_049601301
LinkDB
All DBs
Position
16:complement(8276874..8304164)
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AA seq
2389 aa
AA seq
DB search
MTMPFSPLTSDEEHQRMLGNSRHPYPGAEDEEEEEEEEEEEEMEEDERDEDGEEENGELE
DEVEVRRGGGRGEGPRQSGKGAGRAGNLGHASNPYSANPPHQQLANQQQRRQKERTSGSG
PPPPEDAHIAMMVFRIGIPDIKQTKCLRFNPDATVWKAKQQVLCSLTESLRDVLNYGLFQ
PATDGHDAKFLEEERLLKEYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKASLK
KFMDYIQTNGVDKMSKFLDKGLDPNYQDTDTGETPLSLAVQCEPGGGEPIRVLVDGGAHI
DFRAKDGLTPLHKAVRGHRHIALLVLLSLGASPDYKDRRGLTPLYHTVLTGGDTSCCETL
LYHHAKLGIRDENGWDETHQACQNGNSQHLEHLLFYGADSTSQNASGNTALHLCALYNKE
SCARILLYRGANKETKNNSGQTPFQVAVMSGHFELGEIIKNHRDADVVPFVESPKYAPQR
RESTHTLTLPHPHPFLRANSDNSMNLPEWMAVPNSLSTNIVSVQGFKHTGTIRSSSSPRG
ARTRSPSRGRMGDKDDRSRQQSRKQGPATAPAATGTASTQTAGQRRRLYSAVPGRVFVAT
RAHSAQGEREISFGKGDRVKVLSVGEGGYWEGTVRGRTGWFPSDCVEEVLLRSQEGKSES
RGERAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFT
PTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNSLMV
KVVMVTRNPDMEEGARKKIPQQSKRLSTPAIALRSKSMTSELEEMVERAATPWKKKSELE
SSQVTEKKRTVYQMALNKLDEILAAAQQTISTNEAAGTRGQGPKRDRGRTFYSNEPNYAD
QASPASSGLVLAYERGHYASPHGPPHGMLRQKSIGVPEEEKQFLHPPAMKFARSLSVPGP
DEIPPPPTTAPPDPPYSSAPPFGWRGKASQQPSVSVSQSMVASSYYQPYSQAVHLTQLGR
ERTGGTAVDYSTFYSHVGTHTAQSRTATRKVANTGEPLGGGGGVKAAGLRRGYSSAIPPS
SIATVMPQQQQTGQPQRLERSATGAGGPKGGARRGKGPLVKQSKVEDLRAAQGTLAGKVE
KSSIPIPTIIVKAPSTSSSGRSSQGSSVEADTPAPGEADESKAHHGPPSRTPASQPPAPP
SIPAPPPPSPPSMRAQDGLDFTSQFGAAVVGAARRDRERFHEARRKSASLFMSADEDMSL
GSDSMGGLTRAHLSQQQLNTQTESSNSKLRPSKSIDEGMFSGDTFIHHTRSMPPAFGLPE
YSSPALDYQPKSVPADLYTAAGRQPTPSSTFIHPLTGKALDPTSPLGLALAARERALRDD
SRLRRGPERPFIRQMSSVVFPSSTVTSQPVSSSAQSSSSYLVTSSSLAATTPSVGRPPSP
RILRGGVWAEEGGGGVEREREGGGTREGLRVRFSEDKTVHTHPYQSQGYQPSFKERERER
SREREREASREQQREKEQEVYMRRAEQAANEQASQQPRRPSFLRMESQADAYILSRTTTS
TLPTSTPQMTGSSGNTGSGLMVLPPPAPSVDADDEFVYADPLPPPLEFANSFDRGYSQRR
LLPNISQQKAPPPPPPPPPPPPPPVQKELFGSAFPTHTPLPSPQAGDSTASSLTSYDSEV
ANLTQSAHSPSQTSPNPPPRHSPSILQPTSTSGPPPPPAVSPPPPPGAYHRPLSVSHPHH
LYNSTHAPGRSSPTPPLTVTPPPAYRGPPALSSTAATSAPLRGTTSFATTTSCATTTAAA
ATTTSTSTQLYHERTHATYTTPIQSTHHRTGECHRPPPAAKKGESQETVVDSGIEELDSR
SSSDHHLDSILANVRADRLERGERVGSRLSGGTAESGERGDFLESYMSYLDGQTFEMQNA
TAAASTYPKSSRFREGSRGGELHRQTSTAPASFHSRRRRDEHEREEQEGEEGATMEDESG
QDGYAMRDMQNLGRPSSPYFERPRTPEMKPLWGEGQMGGETGGQFGALLEGKKIYPPASS
MKPNMINELNSKLQQRTKDNWSNQRPLSRHRFSEDSVSALSPPSARSQSPSPISLSQPSL
CQSPTPTSQYPDWGRSPSPQPPAPSQPPRSHSPLSPTSYSPYPTSPKHRPVYRTKALEFQ
FIPNRESRKDPHMLQRRRAPSPLISPSERPKLGPPRPSSLPLLPTSPLYSAMYDLRGSIT
PPSPGNTLGDPYFSPSPLLFAPSGAPPPPNSTLVVSRSLSPTHFLSGTSSPPLHPPTCLS
YPHLPPPSPTKPFASKPLPYWTKYDVADWLGYLNLAEHRERFLDNEIDGTHLPSLTKDDY
LDLGVTRVGHRMNIERALRSVIDRLSSSHFPMSVLSPRDEGRMDDGNHS
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgcccttcagcccgctgaccagcgacgaggagcaccagaggatgctgggaaac
agcagacacccgtacccgggggcggaggacgaagaggaagaagaggaggaggaggaagaa
gaggagatggaggaagacgagcgcgacgaggatggtgaggaggagaacggcgaactggag
gacgaggtcgaggtccggcgaggtggcggcaggggcgaagggcccaggcagtcggggaaa
ggcgccggacgagctgggaacctgggtcatgcatccaatccctactcagccaatcccccg
catcagcagctggccaatcagcagcagcggaggcagaaggagcgcacgtccggctctggg
ccgccgccccccgaagacgcccacattgccatgatggtcttccgcatcggcattccggac
atcaaacaaacgaaatgcctgcgcttcaacccagacgcgacggtgtggaaggccaagcag
caggtgctgtgctcgctcactgagtcactgcgagacgtcctcaactacggcctcttccag
ccggccaccgacggccatgacgccaaattcctagaggaggagcgactgctcaaggagtac
ccgcagtccttcgagaagggtgtgccctatttggagttccgatacaagactcgagtgtac
aagcagactaacttggatgagaagcagctggccaaactgcacaccaaggccagtctgaag
aaattcatggactacatccaaaccaatggtgtggacaagatgagcaagttcttggacaaa
ggcctcgatcccaactaccaggacactgacaccggcgagacgccgctgtcgctggcggtt
cagtgcgagccgggcggcggcgagcccatccgggtgttggtggacgggggcgcccacatc
gacttccgtgccaaagatggcctcacgccgctccacaaggccgtccgaggccaccgccat
attgccctgctggtcctgctatctctgggcgcctccccggactacaaggaccgtcgaggt
ctgacgccgctataccacactgtgctgacagggggcgacacctcgtgctgtgaaacgctg
ctctaccaccacgccaagttgggcatcagggacgagaacggctgggacgaaacgcaccag
gcgtgtcagaacggcaattctcaacacctggagcacctcctcttctacggggcagactcc
acctcccagaatgcatctggaaacactgccttgcacttatgtgctttatataacaaggaa
agctgtgcacgaattctgctgtaccgaggagccaacaaagaaaccaagaacaacagcggc
caaacacccttccaggtggccgtcatgtcgggtcatttcgagttgggggagatcatcaaa
aaccaccgggacgccgatgtagttcccttcgtggagtctccaaagtacgccccccaaagg
cgcgagagcacacacaccctgacgctgcctcaccctcacccgttcctgcgcgccaacagt
gacaacagcatgaacttgcccgagtggatggccgtgcccaactcgctgagcaccaacatc
gtctctgtgcagggattcaaacacacaggaaccattcgcagctccagcagtccccgcggg
gccaggacgcggtctccgtcccgaggcaggatgggggacaaggacgaccgcagccggcag
cagagtcgcaaacaagggcccgccactgccccagccgccaccggcacagccagcacgcag
acggcgggccagcgtcggcgcttatacagcgctgtgccaggacgcgtctttgtggccacg
cgggcgcactcggcccagggcgagcgggaaatcagctttggcaagggcgacagggtcaaa
gtgttgagcgtgggcgaaggaggctactgggaggggacggtccgcggtcgcaccggctgg
ttcccctccgactgtgtggaggaagtcttgctccgaagtcaagaaggcaaatctgagagc
cgcggggagcgcgccaagcgtttgttccgtcactacacggtgggctcctacgacagcttt
gacgctcccagcgactacatcatcaaggagaagacggtgcttctgcagaagaaagacagc
gagggcttcggctttgtgctgagaggtgccaaagctcagacccccatcgaggagttcacc
ccgacgcccgccttccccgccctgcagtacctggagtcagtggatgagggcggtgtcgcc
tggcgggccggccttagaatgggcgacttcctcatcgaggtcaatggtcagaacgtggtg
aaggtgggtcaccggcaggtggtcaacatgatccggcagggcgggaacagcctgatggtc
aaggtggtcatggtgacccgcaaccccgacatggaggagggcgcccgcaagaaaatcccg
cagcaaagcaagaggctgagcacacccgccatcgcgctgcgatccaagtccatgacgtcc
gagctggaggagatggtggaaagagctgccaccccgtggaagaaaaagtcagaactggaa
tcgtcccaagtgactgagaagaagcggaccgtctatcagatggctctgaataaattagat
gaaattcttgcagcggctcagcagacaatcagcaccaacgaggcggcggggacgcgggga
caggggcccaaacgggacagagggcggactttctatagcaacgagccaaactacgcggac
caggccagccccgcatcatccggcctggtcctggcctacgagcgaggccactacgcctcg
cctcacggccccccgcatggtatgctgcggcagaaatccattggagtgcccgaggaggag
aagcagttcctgcatcccccggctatgaagtttgcccgaagtctgtcagtgcctggcccg
gatgaaatcccgccacccccaaccactgcaccaccggaccctccctattcctccgcgccg
ccctttggttggagaggcaaggcctcccagcagccctcggtctccgtgtcgcagtccatg
gtggcttcctcgtactaccagccctactcgcaggcagtacacttaacccaactgggcagg
gagaggacaggcggcacagcagtggactactcaactttctattcccatgtgggcacacac
actgcccaaagcaggactgctacacgtaaggttgctaatacgggagagcctctcggtggt
ggtggtggcgtcaaagcggctggtcttcggaggggctacagcagcgccatccccccatcc
agcattgcgactgtcatgccgcagcaacagcagacgggtcaaccgcaacggctagagcgt
agcgcaacaggagcagggggtcctaaaggcggcgctcggagaggcaagggtcccctggtg
aaacaatccaaggtggaggacctgcgcgcagcccagggcacactcgcgggcaaagtcgaa
aagagctccatccccatccccactatcatcgtcaaggccccgtccaccagcagcagcggg
cgtagcagccagggcagcagcgtggaggccgacacacccgctcctggggaggcggatgaa
tccaaagctcatcatggtcctccttctcgtacccctgcctcacagccccctgcgccgccc
tccattccagcgccgccaccgccatcgccgccgtccatgcgagcccaggatgggctggac
tttaccagccagtttggggcagccgtcgttggtgcggctcgtcgggaccgtgagcgcttt
cacgaagcccgcaggaagagcgcctccctattcatgtccgcagacgaagacatgagtctg
ggtagtgacagcatgggaggactaacgcgggctcacctgtcgcagcagcagctcaacaca
caaactgaaagttcaaactccaagcttcggccttcaaagtccatcgacgagggcatgttc
tctggggacaccttcatccaccacacccgcagcatgcctccagcctttggactaccggaa
tactcttcgcccgccctggactatcagcccaagtctgttcctgccgacctgtacaccgct
gcaggcagacagcccaccccgtcttccactttcattcacccgctgacaggaaaagctctg
gatcccacgtcgcctctcgggctcgccctggcagccagagagcgcgccctacgagacgac
agtcggttgagaaggggcccggagcgccccttcatccgccagatgtccagcgtagtcttc
ccttcgtctactgtcacctcgcagccagtctcgtcctccgcccagtcctccagctcctac
ttggttacttcctcttcgctggctgccaccaccccttccgttggacgtccaccctcaccg
agaatcctcagagggggcgtgtgggccgaggaggggggcggaggggttgaaagagaacgg
gaagggggcggcactcgcgaggggctcagagttcgcttctcggaggacaaaacggtccac
acacacccgtaccagtcccaagggtatcagcccagcttcaaggagagagagcgggagcgg
tcgagggagcgagagagggaggcctctcgggaacaacagcgggagaaagagcaggaagtc
tacatgaggagggcggaacaggccgctaatgagcaggcatcccagcagcctcggcggccc
tcattcctcaggatggagagtcaagccgacgcttacatcttgtcccgcaccacgacctcc
actttaccaaccagtactccgcagatgaccggttcttctgggaacaccgggtctggcctg
atggttcttccgccgcccgccccttcggtggatgcggatgatgaatttgtctacgcagac
cccctcccaccgccattagagtttgccaacagcttcgataggggatactcgcaacgccgg
cttctccccaacataagccaacagaaggcaccgcctcctccacctcccccaccaccgcca
ccacctccacctgtccaaaaagaactatttggaagtgcatttcccactcacacgcccctg
ccgtcgccccaggcgggcgactccaccgcctctagcctcacgtcttatgacagcgaggta
gctaatctgacccaatcggctcactccccctctcagacatcgcccaacccaccacctcgc
cactcaccttcgatcctgcagcccacgtcaaccagcggaccgccacctccgcccgccgtg
tcgccacccccgcccccaggcgcctatcacagacccttatccgtgtcccatcctcaccac
ctatacaacagcacccatgctccgggacgctcctcgcccactcccccgctcaccgtaacg
ccgccccccgcctaccggggccccccagccctttcctccacagctgccacctccgcccct
ctgcggggcaccacttcatttgccacgaccacaagctgtgccaccacaactgccgctgct
gccaccacaacaagcacctccacacagctctaccatgagcgaacgcatgccacatacacc
acccccattcagagcactcaccacaggacaggggagtgccaccgtccgccccctgccgcc
aaaaagggagaatcccaggaaacagtggtcgactctgggatagaagagctggacagccgc
agtagtagcgaccaccacttggacagcatcctggctaacgttcgggctgacaggttggag
cgaggggaaagggtgggcagtcggttatcaggcgggacagcagaatcgggggaacgtgga
gattttctcgagtcatacatgagctacttggatggccaaacttttgagatgcagaatgcc
acagcagcagcgtcaacctacccgaaaagcagccggttcagagagggaagtcgagggggt
gagctccacagacagaccagcaccgcccctgcatccttccactcccgaaggcgaagagac
gaacatgaacgggaagagcaggagggtgaggagggcgccacgatggaagatgaaagcggc
caggatggctacgccatgagggacatgcagaacttagggcgtcccagctcaccttacttt
gaacgcccgcgcactcccgaaatgaagcctctctggggtgaaggacagatgggcggtgag
accggggggcagttcggggcactcttggaggggaagaagatttaccctccggcatcaagt
atgaagccaaacatgatcaatgagctgaacagcaaactgcagcagagaactaaggacaat
tggagcaaccagagacccctgagcagacacagattctcagaagattcggtctcagctctg
agtcctccgtcggctcgctcgcagtccccgtcgccaatctctttatcgcaaccttccctt
tgccagtccccgacccccacctcccagtaccccgactgggggcgatcgccatcccctcag
ccccccgccccctcgcagcctccccgctcacattccccgctgtccccgacgtcatattcc
ccttatccgacttcccccaagcacagacccgtctaccggaccaaagcgcttgagttccag
ttcattccaaaccgtgagtcccgcaaggaccctcacatgctccagcgcaggcgggcaccc
agtcctctaatctccccatcagagaggcccaaattggggccgccccgtccctcgtccctc
cctctgctcccgacttctcccctgtacagtgccatgtatgatctacggggctcaatcacc
ccaccctcgcccggcaacactctcggagacccctacttctctccctcaccactccttttt
gcaccttccggggcccctcctcctccaaactctaccttggttgtttcccgctctctttct
cccactcacttcctgtctgggacatcctctcctcccctgcacccgcccacctgtctgagc
tacccccacctgcctcccccgtccccgaccaagcccttcgcctccaagccgctgccctac
tggaccaagtacgacgtggccgactggctgggctacctgaatctggccgagcaccgtgag
cgcttcctggacaatgagatcgacggcacccacctgccctcgctcaccaaggacgactac
ctggatttgggtgttacccgcgtgggccatcgtatgaacattgaacgggccctgagatcg
gtgatagacaggctttccagcagccacttccccatgtcagtcctctctcctcgggatgag
ggaagaatggatgatgggaatcacagttga
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