Syngnathus scovelli (Gulf pipefish): 125983794
Help
Entry
125983794 CDS
T08785
Symbol
abca3b
Name
(RefSeq) phospholipid-transporting ATPase ABCA3
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125983794 (abca3b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125983794 (abca3b)
Transporters [BR:
sscv02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
125983794 (abca3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
AAA_22
AAA_15
RsgA_GTPase
SRP54
AAA_29
Motif
Other DBs
NCBI-GeneID:
125983794
NCBI-ProteinID:
XP_049601344
LinkDB
All DBs
Position
16:5790816..5806005
Genome browser
AA seq
1708 aa
AA seq
DB search
MAIVRQFGLLVWKNYLHQKRQILVTLVEIILPLLFSGILIVLRQKVPFKDFPNATVYESF
AVGALPQNFLRHLQLAYVPANSSAVRQVAEDVRLNLAIASVRGFETEKHFEDFVRNDPES
GNLLAAMVFEKPCCHNDEPLPLQVSYHLRFTFTPRNAPPKEKSELDPNSDLDWHTLSLYP
LFQLPGPREQYDRHGGTPGYFREGFLAVQHAVDKAIMRSYNRTAADTLLGQTRVVLSRFP
YPPFIYDVFILAIQNQLPLLLVLSFTYTSLNIVRAVVQEKERKLKEYMRMMGLSNWLHWT
AWFLMFFLFLSISVFFVTLLLCIQVSPNGAVLSYSDPTLVFAFLLIFAVATINFSFMISA
FFSRANVAAAAGGFTYFLSYLPYLFLWPRYDLLSHAQKVSACLISNVAMAMGAQLLGMFE
GKGTGIQWSNLFDSVTVDDDFSMAQVMGLLLFDAVLYGLVAWYVEAVFPGEYGVPLPSYF
FILPSYWCSSPRMALLNEKEEEEDAEKALKGEFIEEEPNGVVAGVKIKHLAKEFKVGNKT
RKAVRDLTLNMFEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYINGYDICQDMALIR
RSLGLCPQHDVLFDNLTVREHLLFYAQLKGFSKEKIPEEVDRIICILQLEDKRHARSKTL
SGGMKRKLSIGIALIGDSKVVMLDEPTSGMDPSARRATWDLLQGEKSGRTILLTTHFMDE
ADLLGDRIAIMAGGELQCCGSPLFLKNKYGAGYHMVIVKEALCNVSEITRLVHLYVPNAT
LESSAGAELSYILPKESTSRFELLFAELEMNREELGIASYGASVTTMEEVFLRVGKLVDS
SLDIQAIQLPALQYQHERRSHDWTTDDASSISGMTDVTDFTDSGTLISEDCSNIKLNTGV
RLYLQQFYAMFLKRALYSWRNWKVMVAQFLIPLVFTVVALVVARTLPNHKNAPQLGLELR
RYGPTRVPVALQMEAGALASDLANIFGSQLLAQRGELVNITDFTDYILNQAEEEGGSFNE
RCVVGAAFRGSSKHFAEATAYFNNEGYHTPATALMMVDNALFRLLAGPNASIHAGNYPMP
RNLSEAAQSQLTLGKTGFIIAINLMYGMASLSSTFALLLVTESAIKAKHVQKVSGVYLSN
FWFSALLWDLVNFLLPCLLMLGVFQAFSVDAFTLDNRLVDVLLMLLLYGWAVVPLMYLLS
FLFSSAATAYTRLTIFNMISGTATFLAVTIMTIPELNLQNMSRLLDKVFLIFPNYCLGMS
FSQFYQNYEFISFCTSSPVTEAICKYLNIKYQPNYFSISEPGVGRFLLAFTIQGVVFILL
LFIIELQCVRSLRRLLSSLCRRRKQLSFLGDSTLLAEDRDVADERKRVLECQPMVESMVG
SPLILHELSKVYCNGEPLLAVDRLSLAVGKGECFGLLGFNGAGKTTTFKMLTGDETVTSG
DAYIDGYSILRDIKKVQQRIGYCPQFDAVLDHMTGRETLSMYARLRGIPEKYVSGCVENV
LRSLLLEPHADKLVRNYSGGNKRKLSAGTALIGGPPVIFLDEPSTGMDPVARRLLWDAVT
RTRESGKAIIITSHSMEECEALCTRLAVMVNGQFKCLGSPQHLKSKFGSGYTLLAKVRVE
AELEDSDLKLFKDFIESTFPGSQMKDEHQGMVHYHLTDKTLTWAQVFGTLEAAKEKYSIE
DYCVSQISLEQVFLSFAQFQHCIEGRRK
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggctatcgtgcggcagtttggactcttggtctggaaaaactaccttcaccagaaacgt
caaatcttggtaaccctggtggagatcatcttgcccttgctgttctccggcatcctcatt
gtactgcgccagaaggttcccttcaaggacttccccaatgccaccgtttacgagagcttc
gccgtcggcgctttgcctcaaaacttcttgaggcacttgcagttggcctacgtgccggcc
aactccagcgccgtgcggcaagtggcggaggatgtgcgactcaacctcgccatcgcttca
gtgcgtggctttgagacggagaagcactttgaggactttgtgaggaatgaccccgagtct
ggaaatctcctggccgccatggttttcgagaagccctgctgtcacaatgacgagcctttg
ccccttcaggtcagctaccacctgcgcttcaccttcacccctcgcaacgcaccacccaaa
gagaaatcggagctagaccccaacagcgacttggactggcacacgctcagcctctacccg
ctttttcagctccccggcccgagagaacaatacgacaggcatgggggaacacctggttat
ttccgtgagggcttcctggccgtgcagcacgccgtggacaaagccatcatgcgctcttac
aacaggacggcggccgacacgcttctgggacagaccagagtggttctgtcccgctttcct
tacccgcccttcatttacgacgtcttcatcctggccatccagaaccaactgcctctgctg
ctggtgctcagcttcacctacacgtccctcaacatcgtccgagccgtggtgcaggagaag
gagaggaagctgaaggagtacatgaggatgatgggactcagcaactggctccactggact
gcttggttcctcatgtttttcctgttcctctccatctcagtcttctttgtcacgctgctc
ctctgcattcaagtaagcccaaatggagcggtcttgagttacagtgaccccacgctggtc
tttgcttttcttctaatcttcgccgtggctaccatcaacttcagcttcatgatcagtgcc
ttcttttcacgagccaacgtggcagcggcggcaggcggctttacatatttcctgagctat
ctgccttatttgttcctgtggccacgttatgacctactcagccatgctcagaaggtttcg
gcctgccttatctccaacgtggccatggccatgggagctcaacttttgggaatgtttgaa
ggcaaaggcacgggcattcaatggagtaacttgtttgattcggtaacggtggacgacgat
ttctcgatggctcaggtgatgggcttgctgctgtttgacgccgttctctacggcctggtg
gcctggtatgtggaggcagtttttcctggagagtacggcgtgccgttgccctcatacttc
ttcatactgccttcctactggtgcagcagccctcgcatggctctgctgaacgaaaaggag
gaagaggaggacgccgaaaaggctctgaaaggagaatttatagaggaggagccaaacgga
gtcgtcgccggggttaagataaagcatcttgccaaggaattcaaagtgggcaacaaaacc
cgtaaggccgtgcgggatctcacgctgaacatgtttgaggggcagatcacggtgctgtta
ggacacaacggtgccggcaagaccaccacgctgtccatgttgacaggtttgttcccccca
accagcggcagggcctacatcaacggttacgacatctgtcaggacatggctctgatccga
cgcagtctcggactctgtccccagcacgatgttctgttcgataatctgactgtgagagag
cacctgcttttctatgcccagctgaaaggcttctccaaagagaagatcccagaggaggtg
gacagaataatctgcatcctccaacttgaagacaagcgacacgcccgctccaagacgctg
tcaggcggcatgaagagaaaactctccattggcatcgccctcatcggcgactccaaggtg
gtgatgttggatgagcccacgtccggtatggacccgtcagcccgacgcgccacgtgggat
ctgctgcagggggagaagagcgggcgcaccatcctgctcaccacgcacttcatggacgag
gccgacctgctcggcgaccgcatcgccatcatggccggtggggagctccagtgctgcggc
tcgccgcttttcctcaagaacaaatacggtgccggctaccacatggtgatcgtcaaagaa
gctctctgcaacgtgtcggagatcacccgcctcgttcacctctacgttccgaacgccacg
ctggagagcagcgccggggccgagctgtcttacatcctcccgaaggaaagcaccagcagg
tttgagctgctgtttgccgagctggagatgaacagagaagaattgggcatcgctagctac
ggcgcatccgttaccacaatggaggaggtgtttctcagagtgggcaaattggtggattcc
agtttggacatccaagcaatccaactgcccgccctgcagtaccagcacgaaagacgctcg
cacgactggacgacggacgacgccagcagcatcagcggcatgaccgacgtcaccgacttc
accgacagcggcactctcatctctgaggactgctccaacatcaaattgaacacaggggtg
agactttacctgcagcagttttacgccatgttcctgaagagggcgctgtacagctggcga
aactggaaagttatggtggcccaattcctcatccccttggtgttcaccgtggtggcttta
gtggtggcgcgcaccctccccaaccataagaacgctcctcagctgggactggagttgcgc
cgttacggccccacccgggtccccgtcgctctccagatggaggcgggcgccttagcctcc
gacttggccaacattttcggatcgcagctcctcgctcagcgtggagaactcgttaacatc
acggactttaccgattacatcctgaaccaggcggaggaagaaggcggcagctttaacgag
cgctgcgtggtgggcgccgctttccgcggcagcagcaagcactttgccgaggcgacggcg
tacttcaacaacgagggctaccacacgcccgccacggctctcatgatggtggacaacgct
ctattcagactcctcgccgggcccaacgcttccatccacgcgggaaactacccgatgccg
cgcaatctctccgaggccgcccaaagccagctcacattgggaaagacgggcttcatcatc
gccatcaacttgatgtacgggatggcctccctgtccagcaccttcgcgctcctcctcgtc
accgaatcggccatcaaggccaaacacgtgcagaaggtcagcggcgtctacctgtccaac
ttctggttctcggcgctgctgtgggacctggtcaacttcctgctgccgtgtctcctcatg
ttgggagtgttccaggccttcagcgtggacgccttcacgttggacaaccggctggtggac
gtgctgctgatgctcctgctgtacggctgggccgtggtgccgctcatgtacctgctcagc
ttcctcttctcctccgccgccaccgcttacacccgcctcaccatcttcaacatgatctcc
ggcactgccacattcctggccgtcaccatcatgaccatcccagagttgaacctgcagaac
atgtcccgcctactggacaaagtgttcctgatcttcccaaactattgtctgggaatgtcc
ttttcgcagttctatcagaactacgaattcatctcgttttgcacgtccagcccagtcacg
gaggccatctgcaaatatttaaatatcaagtaccaacccaactacttctccatatccgag
cccggcgtgggacgcttcctgttggccttcaccatacaaggcgtcgtcttcatccttctg
ctcttcatcatcgaactccagtgcgtccgctctctccgacgactcctctcctccctctgc
aggaggcgaaaacagttatcttttctaggagactccacgctccttgccgaggaccgagat
gtagcagatgagagaaagcgggttcttgagtgccagcccatggtggagtccatggtcggg
agtccccttattctgcacgagctcagcaaggtgtactgcaatggcgagcctcttctggcc
gtggaccgcctgtctttggccgtgggtaaaggagagtgttttggtctgctgggcttcaac
ggcgccgggaagaccaccaccttcaagatgctaacgggcgacgagaccgtgacctccggc
gacgcctacatcgacggttacagcatcttgagagacattaagaaggtgcaacagcggatt
ggttattgccctcagtttgacgccgtgttggatcatatgacgggtagggaaaccctgagc
atgtacgccaggctccgaggaatacccgagaagtacgtgtcgggctgcgtggagaacgtt
ctgaggtctctgctgctggaaccacacgcggataaactggtgcgcaactacagcggcggc
aacaagcgcaagctgagcgccggcacggctctcatcggcggacctccggttatcttcctg
gatgagccgtccaccgggatggatcctgtcgccaggaggctgctgtgggacgccgtgacg
cgcacgcgggaatcgggcaaggccatcatcatcacttcgcatagtatggaggaatgcgag
gcgctttgtaccagactggccgtgatggtcaacgggcagttcaagtgtctcgggagcccc
cagcacctgaagagcaaattcggcagcggctacacgctgctagctaaagtacgcgtcgag
gccgagttggaggacagcgacctgaagctttttaaagactttatcgaaagcaccttccca
ggaagtcaaatgaaggatgaacaccaggggatggtccactatcatttgacggacaagacg
ctaacttgggctcaggtgtttggcaccttagaggcagccaaggagaagtacagcattgag
gactactgcgtaagccagatctcattggagcaggtcttcctcagctttgctcagttccaa
cactgcattgaaggcaggaggaagtaa
DBGET
integrated database retrieval system
