Syngnathus scovelli (Gulf pipefish): 125983818
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Entry
125983818 CDS
T08785
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125983818 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125983818 (xab2)
03041 Spliceosome [BR:
sscv03041
]
125983818 (xab2)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125983818 (xab2)
Spliceosome [BR:
sscv03041
]
Complex B
Other components
Prp19-related factors
125983818 (xab2)
Complex C
125983818 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_8
TPR_12
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
Tcf25
LTN1_E3_ligase_6th
TPR_1
Big_2
SNAP
Motif
Other DBs
NCBI-GeneID:
125983818
NCBI-ProteinID:
XP_049601401
LinkDB
All DBs
Position
16:6234725..6265490
Genome browser
AA seq
845 aa
AA seq
DB search
MPSAKRKQDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAPKTVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCINEPVFEEVNNCHERALVFMHKMPRIWTDYCLFLVSQCE
ITRSRRSFDRALRALPVTQHPRIWPLYLRFVRSLPLPETAIRVYRRYLKLSPENTEEYIE
YLKSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGLFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQDEEDDIDLELRLARFEELITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGIPRQIINTYTEAVQTVDAMKATGKPHTLWVTFAKFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHKYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATEAVENEERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAVFWQTWKEFEIRHGNEDTIREMLR
LKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQLGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFIRSDTSRSELAELAKQANPDEIDIDDEDDGQGPEEVQLEQKSVPTAVYG
GLKDD
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggcaaaaaggaaacaggatgttatgtttgaggacgatgatctcccatatgag
gaggagattatcagaaatccatattcagtcaagtgctggatgcgttacatcgagttcaaa
cagaatgcgcccaaaacagtcctcaatatgatctatgaacgggctctgaaagagttgcct
ggaagttataaactatggtacaattacctgagggagaggaggaaacaagtaaaagggaaa
tgtattaatgaaccagtgtttgaagaagttaacaactgccatgaaagagcgctggtgttc
atgcacaagatgcccaggatatggaccgattattgcctgttcctagtgtcgcagtgcgag
atcacaaggagtcggcgatcatttgaccgtgcactccgagctcttcctgttactcagcat
ccacgcatctggcctctctatcttcgctttgtccgaagcttacccctgcctgagacggcc
atacgagtctaccgcagataccttaagctttctccagagaatacagaggaatacatcgag
tacttaaaatctgttggccgcttggatgaagctgctgtacgtctagcggctgtagtcaat
gacgaaagctttgtgtccaaagaaggcaagtcgaactaccagttgtggcacgagttatgc
gacctgatttctcagaaccccgacaaggtgacttctctaaatgttggcgccatcatccga
ggtgggcttactcgctttacggaccagcttggcaagctttggtgctccttagcggattat
tacatcagaagtggcctctttgaaaaggcccgtgatgtgtatgaggaggctattcttact
gttgtaactgtcagggatttcacgcaagtctttgatagttacgcccaatttgaggagagc
atgattgcagccaagatggagaccacctccgagatgggccaggacgaagaagatgatatc
gacctggagcttcgactcgcccgctttgaggagctgataacacggcggcctcttcttctc
aacagtgttctgttgcgccagaaccctcacaatgtccacgaatggcacaaacgtgtaaaa
ctgtacgagggcattccacgacagatcatcaacacgtacacagaggctgtgcagactgtc
gatgccatgaaggccactgggaagccccacacactttgggtcacttttgcaaaattctat
gaggacaatgagcagctggatgatgctaggaccatatttgagaaggccaccaaggtgaac
tacaagcaggtggacgacctggccgcggtttggtgcgagtatggcgagatggaactccgc
cacgaaaactacgaccaggcactgaggatactgaggaaagccacagccatcccatccaag
aaggccgagtactttgatgcctctgagccagtccaaaatagagtctacaagtctttgaag
gtctggtccatgttggcagacttggaagagagtcttggcacattccagtccacaaaagcg
gtgtacgaccgcattattgacctgcgcatcgccacgccgcagattgtcatcaactacgcc
atgttcctcgaagagcacaaatactttgaggagagcttcaaagcgtacgagcgtggcata
gccctcttcaagtggccaaacgtttacgacatctggaacacttacctcaccaagttcatt
gaccgatacggaggcaaaaagctggagcgagcccgggatctctttgagcaagctctcgac
ggctgccccgctaaattcgccaagaccatctacctgctctatgccaagctggaggaggag
tacggactggctcgtcacgccatggctgtttacgaaagagcgacggaggcggtggaaaat
gaggagcgacaccagatgttcaatatctacatcaagagagcggctgaaatatatggcgtc
acgtacaccagggccatttaccagaaggctattgaggttctccctgatgagcattccagg
gacatgtgcttgcgattcgccgacatggagagcaaacttggtgaaatcgatcgggccaga
gctatctattcttactgctctcagatctgcgaccccagggtcactgctgtattctggcag
acgtggaaagaatttgagatccgccatggaaacgaggacaccattagagagatgctccga
ctcaagcgcagcgtgcaggccacgtacaatactcaggtcaacttcatgtcatctcagatg
ctgaaggccactacaagctctacaggcaccgtgtctgatcttgctccaggccagttggga
attgacgacatgaagatgttggagcagaaagcgcagcagcttgcagcagaggcagagcag
gataaacccaagccaaaagaaaagattctctttattaggagtgacacatctcgcagcgag
ttggctgagctggccaaacaagcgaatcccgatgagatcgatattgatgacgaggatgat
gggcaaggcccggaggaagtccagctggaacagaagagtgttcccaccgctgtctacgga
ggtctgaaagatgattga
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