Syngnathus scovelli (Gulf pipefish): 125983838
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Entry
125983838 CDS
T08785
Symbol
colgalt1a
Name
(RefSeq) procollagen galactosyltransferase 1 isoform X1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv00310
Lysine degradation
sscv00514
Other types of O-glycan biosynthesis
sscv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
125983838 (colgalt1a)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
125983838 (colgalt1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
sscv01003
]
125983838 (colgalt1a)
Enzymes [BR:
sscv01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
125983838 (colgalt1a)
Glycosyltransferases [BR:
sscv01003
]
O-Glycan biosynthesis
O-linked Gal type
125983838 (colgalt1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
IF4E
Motif
Other DBs
NCBI-GeneID:
125983838
NCBI-ProteinID:
XP_049601445
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All DBs
Position
16:6129919..6136201
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AA seq
608 aa
AA seq
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MTYGVALALLSLLSGFCTPSLGYFAEERWSPESPLLAPRVVLALICRNSEHSLPYVLGAV
EHLNYPKERIAVWVATDHNEDNTTAILRDWLVKVQSLYHYVEWRPKEEPSRYEDEEGPKE
WPDARYEHIMKLRQVALESAREMWADYFMLMDCDNLLTNPNVLWSLMSENKTVIAPMLDS
RAAYSNFWCGMSSQGYYKRTPAYMPIRKRVRKGCFAVPMVHSTFLIDLRKEASRQLAFHP
PHPEYNWAFDDIIVFAYSARMADVQMFVCNRETYGYLPVPLRGHNTLQDEADSFMHCVME
VEVRHPPVLPSDYIPAPLKQPDKMDFDEVFMINLRRRTDRRERMLRALYQQEIDCKVTEA
VDGKALNISDVQNMGIRMLPGYSDPYHGRPLTKGELGCFLSHYNIWKEIVERGLLTSLVI
EDDLRFEIFFKRRLMYLMDDIEEEGLDWDLIYIGRKRMQVDHSEKAVPNVHNLVEADYSY
WTLGYMITLQGAEKLLRAEPLKRVLPVDEFLPIMYNKHPVSEYMEHFETRDLKAFSAEPL
LVYPTHYTGDSGYISDTETSTVWDNDKVRTDWDRGRSGKTHQQGKLSTEAQNSDVLQSPL
DSTARDEL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacggcgtcgctttggctctgctgtccctgttgtccggcttctgcacgccctcc
ctgggctacttcgccgaggagcgctggagtcccgagtccccgcttctggctcctagggtc
gtcctcgccctcatctgccgcaactctgagcactccctgccttacgtgcttggagccgtg
gaacatctcaactaccccaaagagcgcatcgctgtgtgggtggcgaccgatcacaacgag
gacaacaccacggccatcctgcgcgactggctcgtgaaggtgcagagtctttaccattat
gtggaatggaggccaaaggaggagcccagtcgatatgaggacgaagaaggtcccaaggag
tggccggacgcccgttacgagcacatcatgaagctgcggcaagtcgcactggagtcggca
cgggagatgtgggccgactatttcatgttgatggactgcgacaacctgctcaccaacccg
aacgtgctctggagtctcatgagcgagaataagacggtcatcgcccccatgttggattcc
cgtgcggcctattccaacttttggtgcggaatgtccagccagggctactacaagcgcact
ccggcttacatgcccataaggaagcgggtgcgaaagggctgctttgcggtgccgatggtg
cactccaccttcctaatcgatcttcgaaaggaggcctccaggcagctggctttccacccg
ccgcacccggagtacaactgggccttcgatgacatcatcgtttttgcatactcggctcgg
atggcagacgtgcagatgttcgtgtgcaaccgagagacgtacggctacctccccgtgccg
ctgcgtggccacaatactctgcaagacgaggccgacagcttcatgcattgcgtgatggag
gttgaagtgcgacatcccccggtgttgccgtccgattatattcccgctcccctgaaacaa
cccgacaaaatggacttcgatgaggtcttcatgatcaacctccgaaggcggaccgaccgc
cgagaacgcatgctgagagctctttaccagcaggagattgactgcaaggtcacggaggct
gtcgatggaaaggctttgaacatcagtgacgttcaaaatatgggcatccgcatgctcccc
ggctacagcgacccttatcacggccgcccgctgaccaaaggagagctgggatgcttcctt
tcgcactataacatctggaaggagattgtcgagcgcggcctgctcacctctttggtgatc
gaagacgacctgcgcttcgagatcttcttcaagcggcgtctcatgtacctgatggacgac
atcgaggaagaaggactcgactgggatctcatctacatcggccgcaagcgaatgcaggtg
gaccactcggagaaggcggtgcctaatgtccacaacctggtggaagccgactattcctat
tggacgctgggttacatgatcaccttgcaaggagcggagaagctgttaagagccgagccg
ttgaagagggtgctgcccgtggatgagtttctgcccattatgtacaacaaacatccagtg
tccgaatacatggagcatttcgagacacgtgacttgaaagccttctcagcggagcccctt
ttggtttaccccacccactacacgggagactcgggctacatcagcgacacagagacgtcc
accgtgtgggacaacgacaaggtccgcacggactgggaccgaggacgctcgggcaaaact
caccagcagggcaagctcagcaccgaagcccagaactcggacgtgctgcagtcgccgttg
gacagcacggcgcgggacgagctgtga
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