Syngnathus scovelli (Gulf pipefish): 125983847
Help
Entry
125983847 CDS
T08785
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04120
Ubiquitin mediated proteolysis
sscv04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125983847 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
125983847 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125983847 (mgrn1b)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125983847 (mgrn1b)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125983847 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
125983847
NCBI-ProteinID:
XP_049601462
LinkDB
All DBs
Position
16:complement(6550265..6555126)
Genome browser
AA seq
547 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFATHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDSPVEEGGKPKVQYGV
EFTFDADARVAITLYCQAFEEFSNGMAVYSPKDPSMASETVHYKRGVSQQFSMPSFKIDF
NEWKDDDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSGTDSVPP
GFEPVSLLEALNGLQSTSPAVPSAPLYDDINFSGGDSGRQLSSPEHLSDGSLQKGKVSKS
PDSTLRSPSSPIQEEDEEKLSEMSDAQPHTLLSSSPAPTDATATEDVADSLSPDDEDRLH
AGADILQDCGSEHSSLTKTESDPAGDLSLPGSSESTESLKSQSTNCSSQPLLCPDSSFHR
EDEHLLP
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgggatccatcctaagtcgcagaatcgctggtgttgaggatattgacatccaagctaac
tcggcctatcggtttccaccgaaatctgggaattattttgcgacccactttttcatggga
ggggagaagtttgacacaccacatcccgagggatacctttttggggaaaatatggattta
aatttcctgggaaacaggccagtgcagttcccctacgtcacccctgcaccccacgagccc
gtgaaaaccctcaggagtctggtgaacattcggaaggactcgttgcgcttggttcggtat
aaagacgactctgactcacctgtggaggagggtggcaaaccaaaggttcagtacggcgtt
gagttcacatttgacgccgacgctcgggtggccatcactctctactgccaggcttttgag
gaattttctaatgggatggctgtgtacagcccgaaggatccatccatggcctcggagacg
gtccactacaagaggggtgtgagccagcagttctccatgccttctttcaagatagacttc
aacgagtggaaagatgatgacctcaactttgacctggaccgaggggtgtttcccatggtg
atccaggcagtggtcgacgaaggagatgactgcctcggacacgctcacgtacttttggca
gcctttgaacgacacgtcgatggcagtttctccgtcaagccactgaagcaaaagcaaatt
gtggaccgcgtgagctacctcttacaggagatctacggcattgagaacaagaacaaccaa
gaaactaagccgtccgacgacgagaacagcgacaacagcaacgagtgcgtggtgtgtctg
tcggacctgcgcgacacgctcatcctgccttgcagacacctgtgcctgtgcaactcgtgc
gccgacaccttgcgctaccaagctaacaactgtcccatctgcagactgcccttcagggcc
ttgctgcagattcgagcagtgcgcaaaaagcccggagcgctctcccctgtctctttcagt
cctgttctggcacagacgatggaccacgatgagcactcaggcactgattcagtcccacct
ggctttgagcccgtctcgctgttggaggccctgaacggcctgcagtccacgtcacccgcc
gttccctcagcacctctatatgacgacatcaacttctcgggcggcgacagcggccgacag
ctgagttccccggagcatttgagcgacggcagtctgcagaaaggcaaagtcagcaaatca
cctgacagcaccctgaggtccccatcttcgcccatccaggaagaggatgaggaaaagctg
tcagagatgtcagacgctcagccgcacacgctcctgtcgagcagtccggctcccaccgat
gccaccgcaaccgaggacgttgcagactctctgtccccggatgacgaggacaggctgcac
gccggcgccgacatcctccaggactgcggaagcgaacacagcagcttgaccaaaacagag
agcgaccccgccggcgacctgtcgttgccagggtcgtccgagtccacggagagcctgaag
agtcagagcaccaactgctccagccaacctctcctgtgccccgatagcagcttccaccgg
gaagacgagcacctcctcccctga
DBGET
integrated database retrieval system
