Syngnathus scovelli (Gulf pipefish): 125984022
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Entry
125984022 CDS
T08785
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04382
Cornified envelope formation
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125984022 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125984022 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125984022 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125984022 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125984022 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125984022 (col4a6)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125984022 (col4a6)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125984022 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125984022
NCBI-ProteinID:
XP_049601761
LinkDB
All DBs
Position
1:27192754..27232923
Genome browser
AA seq
1715 aa
AA seq
DB search
MKLLLCVVAVVVAARATQAGDNSNEPCFGLDCSRGCKCNPEKGARGRPGPLGEVGQSGPE
GPRGGLGPTGPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGNDGVPGHTGQQGNRGQPGLD
GCNGTRGEPGYPGYGTGAPGLPGFAGPIGPKGQKGEPRYITDDGVTSLPGLPGEDGRPGA
RGPDGPLGFPGPPGPEGYPGPPGPPGPPGPMGSRSDGYQGEKGDKGDLGLPGPSGTPGDG
SLRSEQTLTIYKGDKGEPGPKGVRGFPGNRGLPSPFGFRGEFGEKGIPGYPGARGPPGFN
GPPGLPGQKGYIGTPGFPGQPGYTGPKGDQGDPGIPGPPAFVGGPSTSIQGPPGEPGFNG
LPGPPGDQGPPGFPGPPGPPGLGGFDTGDRPTLGFRGTPGPKGEKGSPGIPGYGVEGLPG
SPGLPGIPGPPGPQGPPGSQGTPSRPGEPCVIYPEGERPTVSPGTSIPGIPGLPGSRGPQ
GNQGYKGFRGDPGDCNCIGGGSSGLPGPTGRPGTPGNPGFPGSKGESGDPGSPGFEGQGT
PGRAGERGFFGRKGEKGASYYTNYGFGLKGELGATGPRGPTGETGTPGRDGSPGFPGPRG
PPGDVGIGSRGEKGFPGFPGAKGRPGGPGEPGAGFVGTPGFRGEPGEPGFPGLPGTPGLP
GPKGENSCEEVIDSQEGTGQVLPCRIPGEVGLPGFPGVPGQPGTKGQPGLPGGPGRPGLD
GGKGERGDPGYGGQPGPQGFPGPRGDAGVPGIPGRSFDGARGKDGVLGRPGAKGQPGEVL
GATGGPPGQDGFPGSPGDKGQPGTPGGPGSPGLDGRSGVPGLKGERGVDGYPGLPGPAGL
PGDPTVEIPGPPGIDGSKGQSGSSGFPGRKGERGDPGFPGPAGMKGTPGLPGTPGSLGLR
GPPGPPGPGTREGVPGIPGRKGERGFPGVTGFPGSPGRPGNPGYPGGKGGPGGPGRDGLP
GGPGYPGQKGESGFPGPAGPRGPPVLGREAPRGDPGTPGPSGLPGFIGPRGDKGFPGPPG
RQGLPGLPGFAEQSKGLPGQPGFPGQPGFPGGPGPKGEAGILGFPGTAGARGDDGYPGNP
GNPGPSGIPGTKGQPGESYGYPGGPGQKGQPGDPGYPGGRGNTGAPGDDGFPGSPGFPGA
KGGPGEGGRPGIMGSPGYPGPKGQSGFPGRSGSDGTPGLPGGPGGPGPKGLSGAPGLDGL
NGLRGPKGLPGTPGVSAGTRQGAPGVPGLKGERGVSYSGAPGFPGSKGERGAPGGPGVNG
FPGRPGLPGNSVGSDIPGPLGDPGLPGLDGEFGLTGPPGLPGPPGPGTDQGERGDPGLPG
FPGAPGRKGEPAPSGSPGLPGSPGFKGLQGDTGFSGTPGLKGFPGDPGYYGGKGAKGFRG
PAGPKGLPGIILPGRIPLYERSVGDVGPVGNPGSRGFPGGPGQPGLPGRPGPKGRPGAVG
KLGRTGSAGSAGPIGDPGPPGFPGATGDQGPTGAVGRPGSPGSVGRSISIGYTLVKHSQN
AQIPMCPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFIYCSPNEVCYYA
SRNDKSYWLSTTAPIPMMPVAQNQIRPYISRCSVCEAPSQAVAVHSQDLNIPNCPPGWRS
LWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTT
VDPNQEFVYSPAQETLKGGQERSKVSRCQVCSKVL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcctgctgtgcgttgtggcagtcgtcgtggcggcgagagcgacccaggcaggg
gacaattccaacgagccgtgttttggtttggactgcagccgaggatgcaagtgcaaccca
gaaaagggagcgaggggtcgtccagggcccctgggggaggttggtcaaagtgggccagag
gggccccgtggcggcctggggcctacgggccccaaaggagagaagggccacattggcttg
aaaggaccatctggcccgaaaggagacaaaggaccaatgggagtaccaggatttcaagga
aatgatggcgtacctggtcacactggtcagcaaggtaaccgaggacaaccaggactggac
ggctgtaacgggaccagaggcgagcccggctatcctggttacggcaccggagcacccggg
ctacctggttttgcaggacccatcgggccaaagggtcagaaaggagaacctcgatacatt
actgatgatggcgtcactagtttacctggccttccaggagaagacggtcgacctggcgcc
agaggtcccgatggcccactcggcttccctggcccaccggggccggagggatatcccgga
ccacctggtcctccaggtccaccagggccaatggggagtcgtagtgacggatatcaaggc
gaaaaaggagacaagggtgacttggggcttccggggccgagtggtactccaggtgacggg
tctctaagaagcgagcaaaccctcaccatctataaaggagataagggtgaacccggcccg
aagggggtccgtggcttccctgggaaccgcggcctccctagtccttttggtttccgcggc
gaattcggagagaaaggaatacccggatacccaggggcaagaggtcctccgggttttaac
ggacctcctggcctaccaggacaaaagggatacattggaactccaggtttccccggacaa
cccggatacaccggacccaagggagaccagggagaccccggaatcccaggacctcctgct
tttgtcggcggtcctagtacatctattcaaggaccaccgggtgaaccgggctttaacggg
cttccaggtccacccggtgaccaaggacctcctggatttccaggcccgccaggcccacca
ggtcttgggggcttcgatacaggagaccgtcccactttgggtttcagaggcaccccgggc
ccaaagggagagaaaggcagccccggcatacccggctatggcgtcgaaggactccccggc
tcccctggacttccagggatcccgggacctcccggacctcagggaccacccggctctcag
gggacacccagccgacccggtgagccctgcgtcatctatcccgagggggaaaggcccact
gtttcacctggaaccagcatcccggggatcccgggattgcctggttcccgtggaccgcag
ggaaaccaaggatataaaggcttcagaggggatcccggtgactgcaactgtatcggaggc
ggctcctcagggctgcccgggcctactggacgtccgggcaccccgggcaaccccggcttc
ccagggtcaaagggggagtccggtgaccccggctcacctggctttgagggccagggaaca
cctggtcgcgctggtgaacgtggtttctttggccgcaagggagaaaagggagcgtcttac
tacaccaactatggttttggactaaagggagaactcggagcaactgggcccagagggccc
acaggagaaacaggaacaccaggcagggacggatcaccaggcttccccggacctcgcggg
cccccaggcgacgtcggcatcggctcacgcggagagaaaggtttcccgggcttcccgggt
gccaagggtcggcctggagggcccggcgagcccggcgccggctttgtgggtacgcccggt
ttccgaggagaacccggggaacccggttttccgggactgccggggacgccaggtttgcca
ggaccaaaaggtgaaaacagctgcgaagaggttattgacagccaagagggaacgggccaa
gttcttccctgtcgcatacccggtgaagtcggactgcccggttttcccggtgtacctgga
cagccaggtacgaaaggtcaaccgggcttaccgggaggccctgggcgtccgggattagac
ggtggcaaaggagagagaggagaccccggctatggaggacagcctggaccacaaggtttt
cccggacccagaggggacgccggagtccccggtatcccggggcggagttttgatggggcc
agggggaaggatggcgtcctgggacgccccggagccaaaggccagcctggagaagttctg
ggagccaccggggggcctccgggacaggatggttttcccggaagtcccggagataagggc
cagcctggcacaccaggaggacccggatcgcccggtctggatgggcgctcgggtgttcct
gggcttaagggggagcgcggagtggacggttatcctgggcttcctggtcctgccggcctc
ccgggcgacccaaccgtcgaaatccccggtccaccgggaatcgatggcagcaagggccaa
agcggctcatcaggttttcctggtcgaaagggagagagaggagacccaggtttcccagga
cctgctggtatgaagggcactccaggactacccggtaccccgggctcattagggttaagg
ggaccccctggacctccaggaccaggaacaagggaaggagtgccaggaataccaggaagg
aaaggcgaacgaggtttcccaggcgtgacgggcttccccggatcaccaggacgtcctggg
aatccgggatatcctggggggaaaggaggacctggagggccaggaagagatggacttcct
ggagggcccggttatcctggacagaaaggtgaatcagggtttcccggtcccgcaggccca
cgcggccctccagttttaggcagggaggcgcctagaggggaccctggaactcctggaccc
agcggccttcccggcttcatcggaccccgaggggacaaaggttttccaggtccgccgggt
cgtcagggtctgcctggacttccgggttttgctgaacagagtaaagggctgccgggacaa
cctggtttccccggacagcctggatttcccggcggccccggtcctaaaggcgaagccgga
atcctgggattccccggcaccgctggagcaagaggagatgacggataccctggtaacccc
ggcaatcctggaccgtccggcattcctggtaccaagggtcagcctggagagtcgtatggc
tatcccggcggtcctggccagaaagggcagcctggagatccaggatatccaggtggacgt
ggcaacactggcgctcccggtgatgatggctttcctggaagtcccggtttccctggtgcc
aagggaggacctggagaaggtggacggcctggaataatgggttcacctggttacccaggt
cccaaaggtcagtctggcttccccgggagaagtgggtctgatggaacccctggtttgccc
ggaggccctggaggccctggacctaaaggtctttctggagctcctggtttggacggactt
aatggcctccgtggacctaaaggccttcctgggacacctggggtgagtgccggaactcga
cagggtgcccctggtgttccggggttgaagggcgagagaggcgtctcttactcaggagca
ccaggtttcccaggatcaaagggagagagaggagcgccaggtggtcctggagtcaatgga
tttccaggtcgtcctggactccctggtaattcagtcggttcagacattcctggacccttg
ggagatcccggcctccctggcctggatggagagtttggtttgactggtcctccaggcctt
cccgggccacccggtccaggtacggaccagggagaaagaggtgatcccggactcccgggt
ttccctggagcccctggcaggaaaggagaaccagcgccttccggaagccccggactccct
ggcagtcctggcttcaaaggactccaaggtgatactggattcagcggcactccaggtctt
aaaggatttccaggtgaccctggctattacggaggcaaaggagccaaaggtttccgaggc
ccggcgggtccaaagggtctccccggtatcatactgcccgggagaattccactgtatgag
cgatctgtgggagatgtcggtcctgtaggtaaccctggatctcgtggtttccccggaggg
cccggtcagcccggattgcctggacgcccaggtccgaagggacgtccaggcgctgttggt
aaactgggccgcactggttccgctggttcagctggaccaattggtgaccctggtcctcct
ggttttcccggagccactggagatcaaggccctaccggggctgttggtcgacccggtagt
cccggctcggtgggccgcagcatcagtattggctacactctggtgaagcatagccagaac
gcacagattcccatgtgtcctcagggcatggccaaactgtgggacggctacagcttgctt
tacgtggagggtcaagagaaggcacacaaccaggacctcggtcagccgggttcctgcctc
cccaggttcagcaccatcccgttcatctactgctccccaaacgaggtgtgctactacgcc
agccgcaacgacaaatcgtactggctctccaccaccgcgcccatccccatgatgcccgtg
gcccagaatcagattcggccttacatcagcagatgttcagtgtgcgaggcgccatcacag
gcggtggcggtccacagtcaggacttgaacatccccaactgccccccgggctggaggagt
ctctggataggctactccttccttatgcacacagcggccggggccgaaggcggcggccag
tccctggtttcccccggctcgtgcctggaggatttccgggcgacgccattcatcgagtgt
aacggtgccaagggcacgtgccactactttgctaacaagtacagcttctggctgaccacg
gtggatcccaaccaagagtttgtctactcgccagcccaggagaccctgaagggaggccaa
gagcgctccaaagtcagccgctgccaagtgtgcagtaaggtcttgtag
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