Syngnathus scovelli (Gulf pipefish): 125984039
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Entry
125984039 CDS
T08785
Symbol
nup85
Name
(RefSeq) nuclear pore complex protein Nup85 isoform X1
KO
K14304
nuclear pore complex protein Nup85
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125984039 (nup85)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125984039 (nup85)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125984039 (nup85)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125984039 (nup85)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125984039 (nup85)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
125984039
NCBI-ProteinID:
XP_049601783
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Position
16:8366944..8371570
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AA seq
664 aa
AA seq
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MEEVDVDPIITNIPTSRHGKHLGFTWGPGNILVYETLYKQPGGLGSCSSSIHDVRKDEDI
YSPILRKLFNESHHIFVGLQTIREEIPSKNKKSQFVSISKNYRSVIRACIEELQQVAVNT
SDSAVCKQYGNQVSILLAIELIWNLCEVLFIDAAGPLLLHLLNWVRLHKADVDEKAMHVL
RSESPAEHRDYWDVVVGYVLQGRLEEVRQLLLKQANLQPAARSMFKLMDNLLSKMPFYHP
GGTQTSTEFDIKWRHWHEEVDRCLQDNSFASNPHLELVCKILVGDKDTFLEHKELVGTWY
HFLVTRLLYCHPTVKSTELHFYAQSCMTMFLDPRSVPEALDSILLAAFEFDIHQVIKDCS
IALNNWWFVAHLTDLLDHCQLLQSHNLHFGSNLREFLLLEYASGLFTHHSLWQLAVDYFD
HCPEFGRVYLELQMERIPLDTERKALKVLRICEQRQMSEQVRSICKIMAMRALRNNRLGS
ALSWSIRAKDAAFATLISERFLQDYSARGTFSDLDLIDNLGSAMLLSDRLTFLGMIFLKH
SGRPNPRKYREFHKFYGEKHFREAAKLLLSLMTAKIAPRSFWMTLLTDALPLLEQKEVIF
TAEQTYELIFCLEELTSSNSTTAASTTDAPMQEEDLEVTKVELLRLALARNLARAIINEG
TVQM
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtcgacgttgacccgataattacaaatattccaacatccagacatgggaaa
catttgggttttacttggggtcccggaaatatccttgtgtatgagaccctttacaaacaa
ccgggcggtttggggtcatgcagctcctccatccacgacgtcaggaaggacgaagacatt
tactctcccattttacgcaaactcttcaatgagtcacaccacatctttgttggcctccaa
acaattcgagaggagatccccagcaagaacaagaagtcccaatttgtcagcattagtaaa
aattatagatctgtaatccgagcatgtatagaagagcttcaacaagttgcagttaatacc
agtgactcagcggtgtgcaaacaatatggaaatcaggtgtcaatcctgttggccattgaa
ctgatctggaatctctgtgaagtgctcttcattgacgctgcaggccctctgttgcttcac
ctgctaaactgggtgaggctgcacaaggccgatgtggacgagaaggccatgcacgtgctg
cgaagcgagagtcccgctgaacaccgtgactactgggacgtggtggtgggctacgtgctg
cagggccgtttggaggaagtcagacagttgctgctgaagcaggccaacctccagcccgct
gccaggagcatgttcaagcttatggacaacctgctcagcaagatgcccttctatcatccc
ggtggcacccagacgtcaacagagtttgacatcaagtggcgacactggcacgaggaagta
gaccgctgcctccaggacaactcttttgccagcaacccacacctggaactcgtatgcaag
attttagtaggagataaagacactttcctggaacataaagaacttgttggcacctggtac
cactttctggtcacaaggttgctctactgccaccccacagtcaaatccacagagctgcat
ttctacgcacagtcctgcatgaccatgtttctagaccccaggagcgtgccagaagccttg
gacagcattttattagctgcttttgagtttgacatccatcaggtcatcaaggactgcagc
attgccctgaacaattggtggttcgtagcccacctgacagatctacttgatcactgccag
ctcctccagtcccacaatctgcactttggctccaatttgagagagtttctgctgttggag
tacgcatctggtctcttcactcaccatagtctgtggcagttggccgtggactactttgac
cactgccccgagtttggccgcgtttacctggagctgcagatggagcgcatacccttagac
acggagcgcaaagccctcaaggtgctcaggatctgtgagcaacggcaaatgtcggagcaa
gtgcgcagtatttgtaagatcatggccatgcgtgctctgagaaacaacagactcggttcc
gctctctcctggagcatcagagccaaagacgccgccttcgccaccttgatttcagaaagg
tttttacaggattactctgccagagggaccttttccgatctggacctcatcgacaattta
ggttcggcaatgctgctcagtgacaggcttacattccttggtatgattttcctcaagcat
tctgggaggccgaaccccaggaagtaccgtgagttccacaagttttacggcgagaagcac
ttcagggaggcggccaagcttctcctttccttgatgactgccaagatcgcccccagaagc
ttctggatgactctactgacagacgccctgccgctgcttgagcaaaaagaggtcattttc
actgcagagcaaacctatgagcttatcttctgtttggaggaactcacctcctcaaactcc
accaccgctgcttccacgaccgacgcccccatgcaggaggaagacttagaggtgaccaaa
gtggagctcctcagactggccctggcccgcaacttggccagggccatcatcaacgaaggc
acagtgcaaatgtga
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