KEGG   Syngnathus scovelli (Gulf pipefish): 125984044
Entry
125984044         CDS       T08785                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510  Focal adhesion
sscv04512  ECM-receptor interaction
sscv04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125984044 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125984044 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125984044 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sscv04147]
    125984044 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:sscv00536]
    125984044 (col4a5)
Exosome [BR:sscv04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125984044 (col4a5)
Glycosaminoglycan binding proteins [BR:sscv00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125984044 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125984044
NCBI-ProteinID: XP_049601799
LinkDB
Position
1:complement(27169956..27191830)
AA seq 1682 aa
MSKEATRLPGYAVPLLLLALCAAVQRTDSAACHGCAGSKCDCSGVKGDKGERGFPGLTGQ
PGVPGFPGPEGPIGARGEKGSDGPMGLAGPKGIRGPAGLPGFPGTPGLPGLPGQDGAPGP
RGTPGCNGTKGEIGYPGTSGIPGQQGLSGPPGLPGQKGDPGDVISTNRFGEKGAVGFPGL
PGVPGPPGPAGYQGPIGPPGPRGFEGRPGPPGPPGPKGNMGLNFQGPKGEKGDAGLPGPA
GPPGQVGEQLRPTETEIQRGDKGDPGIPGSPGDPGYPGPPGSPGGQKGEKGEPGEPGKRG
KPGKDGEPGPPGFLGLKGDSGIPGSPGRDGERGMKGERGFPGAPGLVISGQTGTQVGPKG
EPGFPGSPGSKGDRGPTGLSGPPGAPGIPGGGGGGIPGQPGFPGERGQKGDTGSPGISLP
GPPGRPGPPGTQGLPGPPGPEGTSTGGEGCVPGSPGRDGLPGERGYPGETGQKGEKGGTC
VTCTSGTIGIPGPPGPDGQPGYPGNPGTPGVKGDRGFPGRPGGNGPPGVPGPQGPPGFPG
EKGEPGEAISGGGTRGEKGDTGFPGPPGLPGLDGRPGRDGQPGLPGPKGAPGPFDGRGER
GIPGDSGPPGIPGDRGPPGPPGFGPPGPSGEKGIQGVSGRPGAPGIPGAKGEPGLAVSEK
GQQGPRGLDGEPGRPGGPGNPGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGPKGFSGTPG
QPGAPGGAGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGLPGVPGAKGFTGPKGDPGFPGG
PGSPGRSGFDGVPGPKGEAGTSGLPGPRGPPGPPTAGSRGPPGPPGLPGPMGPPGYPGAN
GAKGDPGPPGLDIPGLPGDRGSPGFPGSPGPIGTPGPPGGPGRDGLPGLPGAKGDMGPIG
SPGPAGGPGGPGGPGASGQKGESGFPGRDGVPGSTGAKGERGDPGLPGPPGYSPPPLNTK
GAKGEPGLPGTPGFPGQKGIPGINGDPGLPGSDGRPGLPGPSGPKGDPGIPGGPGGPGAP
GLKGSMGEMGFPGPSGQKGLPGLSGRPGTPGQPGVPGFPGAKGEPGSAGVGPPGPQGIKG
DPGQSGFPGSPGPKGTSGLPGLPGLPGGPGAKGDLGPPGFQGSPGIPGPKGLDGGPGGPG
LTGAPGRPGEPGRSGAPGFPGDKGQPGRDGIPGPAGVKGEPGLPGYGEPGPSGLPGLPGA
KGDPGPTGPPGGPGFPGPKGDGGFPGLPGSPGPIGPPGPPGPALQGPKGLQGPPGPPGRA
GVPGPQGSRGPPGIGGVRGEKGIPGAAGQPGFPGQKGDPGVPGFSGPPGTPGAPGVKGDI
GLPGVPGFPGPKGDSGLPGSSGLPGDPGDVGPPGLPGDPGIPQPPIGIKGDRGPPGLPGQ
PGPGGPPGSPGRDGLPGQPGDSGDPGPEGPPGFSGPPGRKGDNGPAGQPGQRGYPGPPGS
DGPQGAPGLPGTGSASHGFLITRHSQIQEVPLCPVGTNLIYDGYSLLYVQGNERAHGQDL
GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMAPITGESIKPFISR
CSVCEAPAMVIAVHSQTIQIPNCPANWESLWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGRGTCNYYGNSYSFWLATVDESEMFSKPQSETLKAGNLRTRVSRCVVCMK
RT
NT seq 5049 nt   +upstreamnt  +downstreamnt
atgagcaaagaggcgacgaggctgcccgggtacgcggtgccgctgctgctgctcgccctg
tgcgccgccgtgcagcggacagactctgcggcttgccatgggtgtgctggatccaaatgt
gactgcagtggagtcaaaggagataagggtgagaggggttttccaggtctcaccggacaa
ccaggggtgccgggattcccgggaccggaagggccaatcggagcccgaggagagaagggt
agtgatggacctatgggtttagctggcccaaaaggaataagaggacctgccggattgcca
ggattcccaggaacaccaggacttccaggtctgccggggcaggacggagctccaggccca
agaggaacgccaggatgcaatgggactaaaggtgaaataggctacccgggaacatccgga
atcccaggacaacaaggactctcgggtccacctggtcttcctggacagaagggcgatccc
ggtgacgtgatctcgacaaatcgctttggggagaaaggagctgtgggatttcctggactg
ccaggagttcctggtcctccagggcctgccggctaccaaggtccaattggccctccagga
ccgagaggctttgagggtcgacctggtcctcccggtcctcctggacctaagggaaacatg
ggactgaacttccaaggccccaaaggagagaagggcgacgctggtttaccgggacctgct
gggccgccgggacaggttggggaacagttgaggccaaccgagacagagattcagagaggc
gacaagggtgacccaggaattccgggctccccaggtgatcccggctatccaggtccccct
ggttcccctggtggccagaaaggagaaaagggagaaccgggagagccaggcaaacgtggc
aaaccaggaaaagacggcgagcctggtccaccaggcttccttggtctcaaaggagactca
ggcattccgggttccccaggcagggatggagagagaggcatgaaaggagaacgtggattc
cccggtgctccaggattggtgattagcgggcagacaggaacacaagtgggtccaaaaggc
gagcccgggttccccggatcacctggcagcaaaggagacagaggaccaacaggtttatca
ggacctccaggagcaccaggaattccaggtggtggtggtggtggtatacctggacagcca
ggcttcccaggagagagaggtcaaaagggagacacgggcagtccggggatctctcttcca
ggtcctccgggtcgccctggaccccccgggacgcagggtctaccagggccccctggacct
gaaggcacttccaccggtggagagggctgtgtccctggcagtcctggacgtgacggcctt
ccgggagagagaggttacccaggagagacgggccagaaaggtgaaaagggaggcacctgt
gtcacctgcacgagtggtacaatcggtatccccggacccccgggtcctgatggacaacca
ggttacccaggaaatcctggtaccccaggtgttaaaggagatagaggattccctggtaga
cctggcggaaatgggccacccggtgtgcccggtcctcaaggtcctccaggattcccagga
gagaagggagagccaggcgaagccatctctggaggcggtaccaggggtgagaagggtgac
actggatttcctggtccacctggtcttccaggtctggatggacggcccggtcgcgatggg
cagcccggtcttccggggcccaaaggagctcctggaccttttgacgggagaggagagcga
gggatccctggtgattcaggtccccctgggatcccaggagatcgaggccctccaggtccc
cccggctttggaccccccggaccatctggagaaaaaggtatccagggtgtctctggaaga
cctggagctcctggtatacctggtgccaaaggtgagccaggcttggcagtgtcagaaaaa
gggcaacagggacccagaggtctggatggggagccgggacgtcctggtggaccaggaaac
ccaggtcagcctggtcaacctggtttccctggattaccaggagccaagggtgaccctgga
ctgcccggtattggacttcctggtccccctggacctaaaggattttctggtaccccggga
caaccaggagctccgggaggagctggtagaccaggggtagatggccttccaggccaacct
ggatttcctggaccaaagggtgaaccaggcttcggcttaccagggcctccaggtttacca
ggtgtacctggagctaaaggtttcaccggacctaagggagatcctggtttccctggaggg
cctggctcaccagggcgatctggatttgatggcgtaccaggacctaaaggtgaagcagga
acatccggtctccccggacctcgtggcccaccaggacccccgacagcaggctcacgtggg
cctccagggcctcctggactcccagggccaatgggtccacctggataccctggagcgaat
ggagcaaaaggagacccagggcccccaggtttagatattcctggattgccaggagataga
ggaagtcctggtttccctggttccccaggacctattggaaccccgggaccccctggagga
cctggaagggatggccttcctgggctgccaggtgccaaaggagatatgggtcccattgga
tctcctggaccagctggaggacccggcggtcctgggggacccggcgcttccggtcagaaa
ggtgagtctggattccctggtagggatggcgttcctggctcgactggagcaaaaggagaa
aggggtgatcctggcctaccaggacctcctggatacagtccaccacctctgaatacaaag
ggtgctaaaggagaaccgggactaccaggaacaccaggttttccaggccaaaagggcatc
cctggtatcaatggtgaccctggacttccaggatcagatggacggcctggacttcctgga
ccatcaggaccaaaaggagatcctggcattccaggtggacctggcggtcctggagctcct
ggactaaaaggcagcatgggagaaatgggatttccaggaccatcagggcagaagggtttg
ccgggcctatcaggtcgacccggaactccaggccaacctggagtgcccggttttccagga
gccaaaggtgaacctggttctgctggggttggaccgcctggaccacagggaatcaagggc
gatccaggccagtcaggttttcctggcagtccagggcctaaagggacttcaggattacca
ggtcttccaggactacctggaggaccgggtgccaaaggtgatctaggtccaccaggattc
caaggatctcctggtattcccggtccaaagggtcttgacggtgggcccggtggcccaggc
ttaaccggagctcctggccgaccaggagagcctggccgatcaggtgcaccaggatttcca
ggagataagggtcaaccgggtcgggacgggatccctgggccggctggcgtcaaaggagag
ccagggcttccaggctatggtgaaccaggaccctctggacttccaggactcccgggtgcc
aagggagaccccggtcccacaggcccacccggcggtcccggtttccccggtccaaaaggc
gacggtggcttccccgggctgccaggctctccggggcccatcggccctcctggacctcca
ggtccagctctccagggtcctaaaggcttacaaggaccccctggaccaccaggaagagca
ggtgtgcctggcccacaaggaagtcgtggtcccccaggaattggtggcgttaggggagag
aaaggtattcccggtgctgctggtcagccaggcttccctggacagaaaggagaccctggc
gttccaggattctcaggtccacccggcactcctggtgctcctggcgtaaagggagacatc
ggtctgcccggcgttcccggattcccaggaccaaaaggagactcaggacttcccggtagc
tctggccttcctggtgaccctggagatgtgggaccgccaggccttccgggtgaccctggt
attcctcagccacccattgggattaaaggagaccgtggaccccctggtcttccgggccag
ccgggtcctggagggcctccgggctctcctggacgtgatggcctcccaggtcagccaggt
gactcgggggatcctggtccagaaggtccccctggattcagtggcccccctggaaggaag
ggagacaacggacctgctggtcagcctggtcagcgcggctatccgggtcctcccggttct
gacggcccacagggtgctcccggtcttcctggcacgggctcggcgtcccacggcttcctc
atcacccgacacagccagattcaggaagtgccgctgtgtccggtcggaaccaacctcata
tacgatggctactccctgctttacgtgcagggcaacgagcgggcgcacgggcaggacctc
ggaacggcgggcagctgtctgcgccgcttcagcaccatgcccttcatgttctgcaacatc
aacaacgtgtgtaactttgcttcccgtaacgactattcctattggctgtccacgccccaa
cccatgcccatgtccatggcccccatcaccggcgagagcatcaagcctttcatcagccgc
tgctcggtatgcgaagctcccgccatggtgatcgcagtccacagccaaaccatccagatt
ccaaactgccccgccaactgggagagtctgtggatcggttactccttcatgatgcacact
agcgccggcgccgagggctccggccaggccttggcctcccccggctcttgtctggaggag
ttccgcagcgcccccttcatcgagtgccacggcaggggcacgtgcaactactacggaaac
tcttacagcttctggttggccacagtggacgaaagcgagatgttcagcaagccccagtcg
gagacactgaaggcgggcaacctgcgaacacgcgtcagccgttgcgtggtctgcatgaag
aggacgtaa

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