Syngnathus scovelli (Gulf pipefish): 125984044 Help Entry 125984044         CDS       T08785                                  Symbol col4a5 Name (RefSeq) collagen alpha-5(IV) chain   KO K06237   collagen type IV alpha Organism sscv  Syngnathus scovelli (Gulf pipefish) Pathway sscv04382   Cornified envelope formation sscv04510   Focal adhesion sscv04512   ECM-receptor interaction sscv04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sscv00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125984044 (col4a5)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     125984044 (col4a5)   09142 Cell motility    04820 Cytoskeleton in muscle cells     125984044 (col4a5)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     125984044 (col4a5)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:sscv04147]     125984044 (col4a5)    00536 Glycosaminoglycan binding proteins [BR:sscv00536]     125984044 (col4a5) Exosome [BR:sscv04147]  Exosomal proteins   Exosomal proteins of other cancer cells    125984044 (col4a5) Glycosaminoglycan binding proteins [BR:sscv00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125984044 (col4a5) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  125984044 NCBI-ProteinID:  XP_049601799 LinkDB All DBs Position 1:complement(27169956..27191830) Genome browser AA seq 1682 aa AA seqDB search MSKEATRLPGYAVPLLLLALCAAVQRTDSAACHGCAGSKCDCSGVKGDKGERGFPGLTGQ PGVPGFPGPEGPIGARGEKGSDGPMGLAGPKGIRGPAGLPGFPGTPGLPGLPGQDGAPGP RGTPGCNGTKGEIGYPGTSGIPGQQGLSGPPGLPGQKGDPGDVISTNRFGEKGAVGFPGL PGVPGPPGPAGYQGPIGPPGPRGFEGRPGPPGPPGPKGNMGLNFQGPKGEKGDAGLPGPA GPPGQVGEQLRPTETEIQRGDKGDPGIPGSPGDPGYPGPPGSPGGQKGEKGEPGEPGKRG KPGKDGEPGPPGFLGLKGDSGIPGSPGRDGERGMKGERGFPGAPGLVISGQTGTQVGPKG EPGFPGSPGSKGDRGPTGLSGPPGAPGIPGGGGGGIPGQPGFPGERGQKGDTGSPGISLP GPPGRPGPPGTQGLPGPPGPEGTSTGGEGCVPGSPGRDGLPGERGYPGETGQKGEKGGTC VTCTSGTIGIPGPPGPDGQPGYPGNPGTPGVKGDRGFPGRPGGNGPPGVPGPQGPPGFPG EKGEPGEAISGGGTRGEKGDTGFPGPPGLPGLDGRPGRDGQPGLPGPKGAPGPFDGRGER GIPGDSGPPGIPGDRGPPGPPGFGPPGPSGEKGIQGVSGRPGAPGIPGAKGEPGLAVSEK GQQGPRGLDGEPGRPGGPGNPGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGPKGFSGTPG QPGAPGGAGRPGVDGLPGQPGFPGPKGEPGFGLPGPPGLPGVPGAKGFTGPKGDPGFPGG PGSPGRSGFDGVPGPKGEAGTSGLPGPRGPPGPPTAGSRGPPGPPGLPGPMGPPGYPGAN GAKGDPGPPGLDIPGLPGDRGSPGFPGSPGPIGTPGPPGGPGRDGLPGLPGAKGDMGPIG SPGPAGGPGGPGGPGASGQKGESGFPGRDGVPGSTGAKGERGDPGLPGPPGYSPPPLNTK GAKGEPGLPGTPGFPGQKGIPGINGDPGLPGSDGRPGLPGPSGPKGDPGIPGGPGGPGAP GLKGSMGEMGFPGPSGQKGLPGLSGRPGTPGQPGVPGFPGAKGEPGSAGVGPPGPQGIKG DPGQSGFPGSPGPKGTSGLPGLPGLPGGPGAKGDLGPPGFQGSPGIPGPKGLDGGPGGPG LTGAPGRPGEPGRSGAPGFPGDKGQPGRDGIPGPAGVKGEPGLPGYGEPGPSGLPGLPGA KGDPGPTGPPGGPGFPGPKGDGGFPGLPGSPGPIGPPGPPGPALQGPKGLQGPPGPPGRA GVPGPQGSRGPPGIGGVRGEKGIPGAAGQPGFPGQKGDPGVPGFSGPPGTPGAPGVKGDI GLPGVPGFPGPKGDSGLPGSSGLPGDPGDVGPPGLPGDPGIPQPPIGIKGDRGPPGLPGQ PGPGGPPGSPGRDGLPGQPGDSGDPGPEGPPGFSGPPGRKGDNGPAGQPGQRGYPGPPGS DGPQGAPGLPGTGSASHGFLITRHSQIQEVPLCPVGTNLIYDGYSLLYVQGNERAHGQDL GTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMAPITGESIKPFISR CSVCEAPAMVIAVHSQTIQIPNCPANWESLWIGYSFMMHTSAGAEGSGQALASPGSCLEE FRSAPFIECHGRGTCNYYGNSYSFWLATVDESEMFSKPQSETLKAGNLRTRVSRCVVCMK RT NT seq 5049 nt NT seq  +upstreamnt  +downstreamnt atgagcaaagaggcgacgaggctgcccgggtacgcggtgccgctgctgctgctcgccctg tgcgccgccgtgcagcggacagactctgcggcttgccatgggtgtgctggatccaaatgt gactgcagtggagtcaaaggagataagggtgagaggggttttccaggtctcaccggacaa ccaggggtgccgggattcccgggaccggaagggccaatcggagcccgaggagagaagggt agtgatggacctatgggtttagctggcccaaaaggaataagaggacctgccggattgcca ggattcccaggaacaccaggacttccaggtctgccggggcaggacggagctccaggccca agaggaacgccaggatgcaatgggactaaaggtgaaataggctacccgggaacatccgga atcccaggacaacaaggactctcgggtccacctggtcttcctggacagaagggcgatccc ggtgacgtgatctcgacaaatcgctttggggagaaaggagctgtgggatttcctggactg ccaggagttcctggtcctccagggcctgccggctaccaaggtccaattggccctccagga ccgagaggctttgagggtcgacctggtcctcccggtcctcctggacctaagggaaacatg ggactgaacttccaaggccccaaaggagagaagggcgacgctggtttaccgggacctgct gggccgccgggacaggttggggaacagttgaggccaaccgagacagagattcagagaggc gacaagggtgacccaggaattccgggctccccaggtgatcccggctatccaggtccccct ggttcccctggtggccagaaaggagaaaagggagaaccgggagagccaggcaaacgtggc aaaccaggaaaagacggcgagcctggtccaccaggcttccttggtctcaaaggagactca ggcattccgggttccccaggcagggatggagagagaggcatgaaaggagaacgtggattc cccggtgctccaggattggtgattagcgggcagacaggaacacaagtgggtccaaaaggc gagcccgggttccccggatcacctggcagcaaaggagacagaggaccaacaggtttatca ggacctccaggagcaccaggaattccaggtggtggtggtggtggtatacctggacagcca ggcttcccaggagagagaggtcaaaagggagacacgggcagtccggggatctctcttcca ggtcctccgggtcgccctggaccccccgggacgcagggtctaccagggccccctggacct gaaggcacttccaccggtggagagggctgtgtccctggcagtcctggacgtgacggcctt ccgggagagagaggttacccaggagagacgggccagaaaggtgaaaagggaggcacctgt gtcacctgcacgagtggtacaatcggtatccccggacccccgggtcctgatggacaacca ggttacccaggaaatcctggtaccccaggtgttaaaggagatagaggattccctggtaga cctggcggaaatgggccacccggtgtgcccggtcctcaaggtcctccaggattcccagga gagaagggagagccaggcgaagccatctctggaggcggtaccaggggtgagaagggtgac actggatttcctggtccacctggtcttccaggtctggatggacggcccggtcgcgatggg cagcccggtcttccggggcccaaaggagctcctggaccttttgacgggagaggagagcga gggatccctggtgattcaggtccccctgggatcccaggagatcgaggccctccaggtccc cccggctttggaccccccggaccatctggagaaaaaggtatccagggtgtctctggaaga cctggagctcctggtatacctggtgccaaaggtgagccaggcttggcagtgtcagaaaaa gggcaacagggacccagaggtctggatggggagccgggacgtcctggtggaccaggaaac ccaggtcagcctggtcaacctggtttccctggattaccaggagccaagggtgaccctgga ctgcccggtattggacttcctggtccccctggacctaaaggattttctggtaccccggga caaccaggagctccgggaggagctggtagaccaggggtagatggccttccaggccaacct ggatttcctggaccaaagggtgaaccaggcttcggcttaccagggcctccaggtttacca ggtgtacctggagctaaaggtttcaccggacctaagggagatcctggtttccctggaggg cctggctcaccagggcgatctggatttgatggcgtaccaggacctaaaggtgaagcagga acatccggtctccccggacctcgtggcccaccaggacccccgacagcaggctcacgtggg cctccagggcctcctggactcccagggccaatgggtccacctggataccctggagcgaat ggagcaaaaggagacccagggcccccaggtttagatattcctggattgccaggagataga ggaagtcctggtttccctggttccccaggacctattggaaccccgggaccccctggagga cctggaagggatggccttcctgggctgccaggtgccaaaggagatatgggtcccattgga tctcctggaccagctggaggacccggcggtcctgggggacccggcgcttccggtcagaaa ggtgagtctggattccctggtagggatggcgttcctggctcgactggagcaaaaggagaa aggggtgatcctggcctaccaggacctcctggatacagtccaccacctctgaatacaaag ggtgctaaaggagaaccgggactaccaggaacaccaggttttccaggccaaaagggcatc cctggtatcaatggtgaccctggacttccaggatcagatggacggcctggacttcctgga ccatcaggaccaaaaggagatcctggcattccaggtggacctggcggtcctggagctcct ggactaaaaggcagcatgggagaaatgggatttccaggaccatcagggcagaagggtttg ccgggcctatcaggtcgacccggaactccaggccaacctggagtgcccggttttccagga gccaaaggtgaacctggttctgctggggttggaccgcctggaccacagggaatcaagggc gatccaggccagtcaggttttcctggcagtccagggcctaaagggacttcaggattacca ggtcttccaggactacctggaggaccgggtgccaaaggtgatctaggtccaccaggattc caaggatctcctggtattcccggtccaaagggtcttgacggtgggcccggtggcccaggc ttaaccggagctcctggccgaccaggagagcctggccgatcaggtgcaccaggatttcca ggagataagggtcaaccgggtcgggacgggatccctgggccggctggcgtcaaaggagag ccagggcttccaggctatggtgaaccaggaccctctggacttccaggactcccgggtgcc aagggagaccccggtcccacaggcccacccggcggtcccggtttccccggtccaaaaggc gacggtggcttccccgggctgccaggctctccggggcccatcggccctcctggacctcca ggtccagctctccagggtcctaaaggcttacaaggaccccctggaccaccaggaagagca ggtgtgcctggcccacaaggaagtcgtggtcccccaggaattggtggcgttaggggagag aaaggtattcccggtgctgctggtcagccaggcttccctggacagaaaggagaccctggc gttccaggattctcaggtccacccggcactcctggtgctcctggcgtaaagggagacatc ggtctgcccggcgttcccggattcccaggaccaaaaggagactcaggacttcccggtagc tctggccttcctggtgaccctggagatgtgggaccgccaggccttccgggtgaccctggt attcctcagccacccattgggattaaaggagaccgtggaccccctggtcttccgggccag ccgggtcctggagggcctccgggctctcctggacgtgatggcctcccaggtcagccaggt gactcgggggatcctggtccagaaggtccccctggattcagtggcccccctggaaggaag ggagacaacggacctgctggtcagcctggtcagcgcggctatccgggtcctcccggttct gacggcccacagggtgctcccggtcttcctggcacgggctcggcgtcccacggcttcctc atcacccgacacagccagattcaggaagtgccgctgtgtccggtcggaaccaacctcata tacgatggctactccctgctttacgtgcagggcaacgagcgggcgcacgggcaggacctc ggaacggcgggcagctgtctgcgccgcttcagcaccatgcccttcatgttctgcaacatc aacaacgtgtgtaactttgcttcccgtaacgactattcctattggctgtccacgccccaa cccatgcccatgtccatggcccccatcaccggcgagagcatcaagcctttcatcagccgc tgctcggtatgcgaagctcccgccatggtgatcgcagtccacagccaaaccatccagatt ccaaactgccccgccaactgggagagtctgtggatcggttactccttcatgatgcacact agcgccggcgccgagggctccggccaggccttggcctcccccggctcttgtctggaggag ttccgcagcgcccccttcatcgagtgccacggcaggggcacgtgcaactactacggaaac tcttacagcttctggttggccacagtggacgaaagcgagatgttcagcaagccccagtcg gagacactgaaggcgggcaacctgcgaacacgcgtcagccgttgcgtggtctgcatgaag aggacgtaa

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