Syngnathus scovelli (Gulf pipefish): 125984120
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Entry
125984120 CDS
T08785
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125984120 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125984120 (ddx5)
03009 Ribosome biogenesis [BR:
sscv03009
]
125984120 (ddx5)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125984120 (ddx5)
Spliceosome [BR:
sscv03041
]
Complex A
U1 snRNP components
U1 related factors
125984120 (ddx5)
Complex B
125984120 (ddx5)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
Helicases
125984120 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
125984120
NCBI-ProteinID:
XP_049601998
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All DBs
Position
16:2919233..2924369
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AA seq
611 aa
AA seq
DB search
MPGYSDRDRGRDRDRDRGYGGGPHRFGGSRGGGGGGGGGPKFGNPGDRLRKKHWNLDELP
KFEKNFYQEHPDVSRRPLQEVENYRMAKTITVKGRNCPNPIVNFHEASFPTYVMDVINKQ
NWTDPTPIQAQGWPLALSGNDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV
LAPTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL
EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED
FLKDYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKR
RCDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKF
VINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNVRQASDLISVLREANQAINPKLL
QMGEIRGGRSRGGRGGDFDRSRYSSGRRDFGRDRDSFDNGPNKSFSTNTQNGGYGGTGAA
TNSFSGGYNGNGQPFANPAASFAPQNNFQAQQNGVSHPPFPFPQPQPPQQHPPQPHPPGI
APYPMPPQFPQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgatagagatcgtggccgagaccgggacagagatagaggctacggt
ggtggccctcatcgttttggaggtagccgtggcggcggcggcggtggaggaggtggacca
aagttcggcaaccccggtgaccgtcttagaaagaaacactggaatctggacgagcttccc
aagtttgagaaaaacttttaccaggagcatccggatgtatcgaggaggcctttgcaagaa
gttgaaaattacagaatggccaaaacaatcacagtaaaggggagaaactgccccaacccg
attgtaaatttccacgaggcaagctttccaacctatgttatggatgtcatcaacaagcaa
aactggactgacccaacccctattcaggctcagggctggcctttagccctgagtgggaat
gacatggttggcattgcacagactggttctggcaaaactctgtcgtatctgttgcctgca
attgttcacatcaaccaccagcctttcctggagcgcggtgatggacctatttgcttggtg
ctggccccaactcgtgagctggcacagcaggttcaacaagtggctgcagagtatggcaga
gcttctcgcctgaagaccacttgtatctatggaggagcacccaagggaccgcaaattcgt
gaccttgaaagaggtgtggagatctgcattgcaactccaggcagactcatcgacttcctt
gaagcaggaaagactaacctgcgccgttgcacttacctcgtattggacgaggctgataga
atgctggacatgggatttgaaccacagatcaggaaaattgttgaccagatcagacctgat
cgtcaaacactgatgtggagcgctacctggccaaaagaggtgcgtcagctggctgaagac
tttttgaaagactacgtgcagatcaatgttggggccctgcagctcagtgctaaccacaac
atccttcagattgttgacgtatgcaatgatggcgagaaagagaacaaactcattcgcctg
ctggaggaaatcatgagtgagaaggagaacaagactatcatcttcgtggagacaaaaagg
cgatgtgatgacctgacaaggaggatgaggcgggatggatggccagctatgggaattcat
ggagataagagccagcaggagagagactgggttcttaatgagtttaagtatggaaaggct
cccattctgatcgctacagatgtcgcgtctcgtggtttagatgttgaggacgtgaaattt
gtcatcaactttgactaccccaacaactctgaggactatatccaccgaattggcagaacg
gcccgtagccaaaagactggcacagcctacaccttcttcacccccaacaacgtgagacag
gccagcgacctcatctctgttctacgtgaggccaatcaggccatcaaccccaagctcctc
caaatgggtgaaatcagaggaggtcgttcaaggggaggcagaggtggtgatttcgaccgc
agccggtattcttctggaaggcgagattttggcagagacagggatagctttgataacgga
ccaaacaaaagctttagcacaaatactcagaacggaggatacggcgggaccggcgctgct
actaatagttttagtggcggctacaatggcaacggacagccatttgctaacccggcagca
tccttcgccccgcagaacaacttccaagcccagcagaatggcgtaagtcaccccccattc
cccttcccccaaccacagccccctcagcagcatccgccccagccgcatccacctgggatt
gcgccataccccatgccgccacaattccctcagtaa
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