Syngnathus scovelli (Gulf pipefish): 125984122
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Entry
125984122 CDS
T08785
Name
(RefSeq) ran GTPase-activating protein 1 isoform X1
KO
K14319
Ran GTPase-activating protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125984122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125984122
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125984122
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RanGAP1_C
LRR_6
LRR_4
LRR_8
CDC45
Nop14
SDA1_dom
DUF4746
BUD22
Motif
Other DBs
NCBI-GeneID:
125984122
NCBI-ProteinID:
XP_049602001
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Position
16:3393104..3397567
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AA seq
582 aa
AA seq
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MATDIVSQLADSLAKAKVQEGELSYKGQGRKLDDSKSVEEIVKDIENFEGLQALRLEGNT
VGVEAAKAIAKALETKSLFKCCYWSDMFTGRLRSEIPPALNSLGDALMLAGAKLTVLDLS
DNAFGPDGVKGIEQLLKSSSCYTLQELRLNNCGMGIGGGKILAASLIECHKKSSAEGPPL
SLKVFIAGRNRLENDGATALAQAFQLMGSLEEIHMPQNGINHPGVKALATAVQHNPNLRT
LNLNDNTFTEKGAIAMAQALKHLRSIQVINFGDCLVRPVGAAAIAETVSEGLPILKELNL
SFGEITEDAALAVAHAVKNKNQMEKLDLNGNCLGEDGCKVLRDFMEDSNMAELLVSLSDD
EGEPGDDEDEDDGDDDDEDDEEVDEEEEEEEEDEEDEEEEEEEEEQDLNVCSKFSTPPSA
QRPPDVSSFLSFPSPDKLLRLGSKRAALIEQQVDVTDAGKTAEAFLKIASVYKEDNSEVK
SAVLESVDALLRKAFSSIQGYNFVSSLLVLLGLIKSEDKVKPVLVVSGHLQALEHAVRQD
YFPKESVAVLEAFMSRNNKALESCGSSRYKLQSTLQTTRTES
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagacattgtttcacagttggccgactccctggccaaagctaaagttcaagaa
ggggagctgagttacaaaggccagggaagaaagctggatgattcgaaatcagttgaagag
attgtgaaggacatcgagaactttgaaggtctccaagctctccgattggaaggaaacact
gtgggtgttgaggcagcaaaagccatcgccaaggccctcgagacaaagagcctgttcaag
tgctgttactggagtgacatgtttactggccgtctccgctctgagatccctcctgctctg
aattctctgggtgatgctctaatgctggcgggtgccaagctgaccgttttggatctcagt
gacaacgccttcggcccagacggggtgaaggggattgagcagttgctcaaaagctcttcc
tgctacactcttcaggaactacgactcaacaactgcggcatgggtattggagggggaaag
atattagctgcttcgctgattgagtgccataaaaagtccagtgcagaaggtccaccgctc
agcctgaaagtgttcatcgccgggaggaatcgtctggagaatgacggcgccacagctcta
gctcaagcgttccagttaatggggagcctggaggagatccacatgccccaaaatggcatc
aatcaccccggtgtcaaagccctggcgacggctgtacagcacaatcctaacctacgcacc
ctcaatctcaatgacaacaccttcactgagaagggcgccattgccatggctcaggccttg
aaacatttacgaagcatccaggtgatcaatttcggagactgtttggtgcgcccagttgga
gcagcagcgatcgctgaaacagtttcagaaggactccccatcttgaaggaacttaatctg
tcgttcggagagataactgaagatgctgcactggctgtggcccatgctgtcaagaacaag
aatcagatggaaaaactggatttaaatggaaactgcctgggagaggacggctgcaaagtt
ctgagagatttcatggaagacagcaacatggccgagcttctggtgtcgctcagtgatgat
gagggtgaaccaggagatgatgaggatgaggatgatggcgatgatgacgatgaggatgat
gaggaggtggatgaagaggaggaagaggaagaagaggatgaggaagatgaggaggaagag
gaggaagaagaggagcaagatttaaacgtttgcagcaagttttccacacccccatcagca
caacgaccgcccgatgtctcatcctttctcagttttccatcgccagataaactgctcagg
ctggggtccaaaagagctgcactgattgaacagcaggtggacgtgaccgacgcaggaaaa
acagccgaagcctttctcaaaattgcatctgtgtataaagaggacaatagtgaagtcaag
agtgcagtcttggaaagtgtcgatgcccttttgaggaaagccttttcttctatccaaggc
tacaactttgtatcctctttgctggtcttgctggggcttattaagagtgaagacaaagtg
aagcctgtgctggtggtctccggtcacctgcaggctttggagcacgcagttcgccaggat
tacttccccaaagagagtgtggctgtgctggaggccttcatgtcccgaaacaacaaggct
ttggagtcctgcggctcttctcgatacaagcttcagtccaccttgcagacgacacgcaca
gagagctga
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