Syngnathus scovelli (Gulf pipefish): 125984138
Help
Entry
125984138 CDS
T08785
Name
(RefSeq) ATP-dependent RNA helicase DDX39A isoform X1
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125984138
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125984138
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125984138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125984138
NCBI-ProteinID:
XP_049602039
LinkDB
All DBs
Position
16:complement(2757269..2772016)
Genome browser
AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEDDEEPQGAPESGVPANKKEVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVNGQVAVLVMCH
TRELAFQISKEYERFSKYMPTVKSVVFFGGLPIKNDEDVLKKNCPHIVVGTPGRILALVR
NKTLSLKNVKHFILDECDKMLEQLDMRCDVQDIFRITPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKRIQRCI
ALSQLLVEQNFPAIAIHKGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaacgacgttgataacgagctgctcgactacgaagatgacgaagaaccccaa
ggagcaccagagagtggcgtccccgccaacaagaaggaggtgaagggatcctacgtttca
atccacagttccggcttcagggacttcctgctcaaacccgagttactacgtgccattatc
gactgtggctttgaacatccatcagaagtccagcacgaatgcattccacaagccatttta
ggaatggacatcctttgccaagcgaaatcgggcatgggcaagacagccgtgtttgttttg
gccactcttcaacagcttgaaccagtcaatggacaggtagcagtattagtcatgtgtcac
acgcgagagctggcctttcaaattagcaaagaatacgagcgcttctccaagtacatgcca
acggtcaaatcggtagtattcttcggcgggttgcccatcaagaacgacgaggacgtcttg
aagaagaactgcccccatatagtcgtcggaacgcccggccgcatcctcgctctggtccga
aacaaaacactcagtctgaagaacgtcaagcatttcatcctggatgaatgtgacaaaatg
ttggagcagcttgacatgaggtgtgacgttcaagacatcttcagaatcacgccccacgag
aagcaggtcatgatgtttagcgccacgctaagcaaggaaatccgacctgtttgtcgcaaa
ttcatgcaggaccccatggaggtatttgtggatgacgagaccaaactgacgctgcacggc
ctgcagcagtactactgcaagttgaaagacagcgagaagaaccgcaagctatttgatctg
ctcgacgtgttggagttcaaccaagtggtgatctttgtcaagagaatccaacgctgcatt
gctttgtcacaacttctggtggaacagaatttccccgctattgccatccacaaagggatg
gcccaagaggagagactgtctcgctatcagcaattcaaagacttccaaagacgtatattg
gtggccaccaacctcttcggccgagggatggacatcgagcgggtcaatatcgtcttcaac
tacgacatgccagaagattcagacacgtatttacacagggttgcccgtgctggcaggttc
ggcaccaaaggcttggctataacatttgtgtccgacgaaaccgacgccaagacgctgaac
gacgtgcaggaccgttttgaggtcaacgtggccgagctgcccgatgaaatcgacatctcc
tcttacattgagcaatccagatga
DBGET
integrated database retrieval system
