Syngnathus scovelli (Gulf pipefish): 125984219
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Entry
125984219 CDS
T08785
Symbol
frmpd1b
Name
(RefSeq) FERM and PDZ domain-containing protein 1 isoform X1
KO
K23954
FERM and PDZ domain-containing protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125984219 (frmpd1b)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
Other domain-containing proteins
FERM domain-containing proteins
125984219 (frmpd1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FERM_M
RA_2
FERM_C_FAK1
PDZ_6
PDZ
FERM_f0
DUF6288
Motif
Other DBs
NCBI-GeneID:
125984219
NCBI-ProteinID:
XP_049602184
LinkDB
All DBs
Position
1:complement(10652323..10674308)
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AA seq
1675 aa
AA seq
DB search
MEEKERCRSRSPARRASRVQQVVGTIIRRTRESLSRERLLGDGRPQRSNSLSNQNYQAKL
SLQITRDPVLDRSTGHGFLLTTNTPLLVRDVATGSPADGILYPGDQVLQINDTVLDDLNG
DEVENILRDLEDCITMTILRHMTNPKSSIMSAEKRARLRSNPVKVRFAEEVVVNGHTQGN
SLLFLPNVLKVYLENGQTKAFKFDHTTTVKDIVLTLKDKLSIRAIEYFALVLEQQYSITK
LLLLHEDDLIQKVVQKKDSHDYRCLFRVCFVPRDPADMQQEDAFAFEYLFLQSVGDVLQE
RFAVEMKCNTALRLAALHMHERLDSCGLTRTSIKAITKEFGLDSFISPTLLSNMREKDLR
KAISYHLKKIQSLLEPRQKVISASQARLAYLTQLGELVSYGGRSYSATMMLQEREVLVSL
LVGAKYGMSQVINHKLNVISTLVEFSSISRVELLSESDKVSLLRISLHDMKPFALLMDSL
AAKDLACLLAGYCKLLVDPSLNVFRMGRPKVRVHRIAAEEGVCGKVTVVEGVCYESLSSY
VSRCCSDSDDSTDEDDPMDSQHYKHHDPASQDWEERRREEEEKRKEEERQEREEQNGKKE
VKIIVTKEGDEYEEGEEERGASGSGLRKVMNDELNSETTWYHTDLRVTSSFSSLSSGSLS
AALEESSTTVKALPRLDASLTRENLQIMDVHQPYLLESKCLQGPSRPTNLNYRVSDKPCL
CFSELSKADLLSSPSGATSDDEEEEEEEEERGREVLRRISKIPSSRDLRMIDSTPFERAA
IKRKKKTPPKVPIRTSSIPGHKAGQAEKRLSKDDESLFQTPSPNPKAAVLVKENASESEE
EFFDAQERFTSPVPDLSDVELADRQNANRLSGTWNSLPALGKEPSSPLFQSSKIKKEVQE
LKHPTNTVSNLVSKPCPAEKPEVKVKPPLAPKPQLPPKPQIIPPKSPKHGKSYAHCNGDA
CGRLSSDLLEMEPETMEFKSVTYGTGGSPLITAVRCNKQALPVTALQTKVEQTKRPKDDA
QRVVFKDKTYIPDKMEPSEVTKSHGTTKKLQNASLILRSSSGSKLSAPPPVPPKPTSPKI
LHPLTLVASSPVSPTDPNKSIFKDSTSPPNGIHPWSSCNGSVQSGPRRVSVSHESLSPKN
ADASIATSLTSNSSKAVTGQESREERRSGSGTDLRSSSSSLGGRLSASALRGKIQALPWY
MTRSQEILGTLDYPSTSSINGDTSGFGSGLSVASGLSDTNKTPVKDKETAASKSGGKGNL
LEDGAEVVIATIKEAGDVSSYLRKVNGTNGSHPNLNFASNSAHNVSSEQPQSRTHSAVGI
GGISNMQIGGDSPTSSLGDGTPPQQREACGCRTVYANCFSGDNEDGISFDEELTVYEFSR
RTRPKTTRPPPVPSPTTPAPNPNILSLLRDNPRPLSTFSTASSELSPLVSCPVSPTTSLR
SPLCSLTNKNYGSLKGGFASLRQDIDQLLLVLERALPEPMQTNILSKQDGAGPDPNHNGS
EGSAMQTGCTGCSPANMTEAERNLLQAEARRLASGCQRATRVGWAPDEALRSLSNSFGAL
VQLSAACMRTSPCADCDSCHSASLADDSHEPMDKLKEIVALYREFVGAVETAGTGTGGKS
VGLNGSGQSQGEGDGVRLLAKRCTVLISSVFALTQLFRTPTLVSSDTASGVPLNF
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaggagcggtgtcggagcaggtctccagcgcggagggcgagccgggttcaa
caagtggtgggaaccataatacgtcgtacccgagaatcactgagcagagagcggttgcta
ggcgatgggaggcctcaacgttccaacagcctgtccaatcagaattaccaagccaagctg
tcactacagatcaccagggatcctgtgctggaccgaagcaccggacatggattcctcctc
accacaaacacacccctgctggtcagggatgtagccacagggagtcctgcagatgggata
ctctaccctggggaccaagtcttgcagatcaatgatactgttctggatgatttgaacggc
gatgaggtggaaaacatcttaagggacttggaggactgcataaccatgacgatcctccgg
cacatgactaatcccaaatcatccatcatgtcagcagagaagagagcccgtctgaggagt
aatccagttaaagtgcgctttgcagaagaggtggtggtcaatgggcacactcagggaaac
tctcttctcttcctgcccaacgttctaaaagtctatctagagaacggacagaccaaggcc
ttcaaatttgaccacaccaccactgtcaaggatattgttctgactctgaaggataaatta
tccatccgggctatcgaatactttgccctggtgctagagcaacagtacagcatcaccaaa
ctactgctgctgcatgaagatgatcttatacagaaggtggtgcaaaaaaaagactcccat
gattacagatgtctattccgggtgtgcttcgtccccagagatcccgcggacatgcaacag
gaggacgcctttgcctttgagtacctatttttacagagtgttggtgatgtactacaggag
cgctttgccgtcgaaatgaagtgtaacactgcacttcgtctcgctgccctgcacatgcac
gagagactcgatagctgcggactgaccaggacctccatcaaagccattacgaaggagttt
ggccttgacagcttcatttctcccacgctgctgagcaacatgagggagaaggacctgaga
aaagccatcagctaccacctcaaaaaaattcagtctctgttagagcctcgccagaaggtg
atatctgcttcccaggctcggctagcctacctcactcaactgggagagcttgtttcctac
ggaggaaggtcctactcagctacgatgatgcttcaagaacgggaggtgttggtcagcctg
ttggtgggagccaagtacggtatgagtcaggtcatcaatcacaaactcaacgtaatctcc
acattggttgagtttagcagcatcagccgcgtggagttgctttctgagtcggacaaagtc
agtctactgcgcatctcactgcacgacatgaagccatttgccttactgatggactctctg
gcagccaaagacctagcgtgtctgctggcagggtactgcaaactcctggtggatccgagt
ctcaatgtcttccgaatgggacgtcccaaagtgagggtgcaccgcattgctgctgaagaa
ggtgtgtgtgggaaggtcaccgtagtagagggcgtgtgctatgagtccctatcaagttac
gtgtctcgctgctgcagtgactcagacgactcaacagatgaggatgatccaatggactct
cagcattacaaacaccatgacccggcaagtcaggactgggaggaaagacgaagggaggag
gaagaaaagaggaaagaggaagagagacaagagagggaggagcagaacggcaaaaaggag
gtgaagataatagtaacaaaagaaggtgacgaatacgaggagggtgaagaggaacgaggt
gcttcgggaagcggtctgcgtaaagtgatgaatgacgaattgaattcggagaccacttgg
taccacacggatctacgggtgaccagcagcttttccagcttgtctagcggctcgttgagt
gccgccctagaagagagcagcactacagtcaaagctctccctcgtctcgatgcatccctc
acaagagagaatctccaaatcatggatgttcatcaaccctaccttctggaatcaaaatgc
ctccaaggcccttcaagaccaaccaatctcaattacagagtcagtgacaagccttgtctt
tgtttttctgaactctctaaagcagatcttctctcgagcccatcgggagctactagtgat
gatgaagaagaggaagaggaggaagaagagcgaggaagagaggtactgagacgcatttca
aagatcccgagttcgagagatttaaggatgattgacagcacacctttcgagagagcggcc
attaaaagaaagaagaaaacccctcccaaagtaccaatacgaaccagttccataccaggt
cacaaagcaggacaagctgagaagcgcctctcaaaggatgatgagtctcttttccaaacc
ccttccccaaacccgaaagcagctgttttggtcaaagagaatgcgtccgagtccgaagag
gagttttttgatgcacaggagagattcacttctccagttccagatctctcagacgtagag
ctcgcggatcggcagaatgcgaatcggttaagtggaacatggaattctcttcccgctctg
ggaaaagagccgtcctcacccctttttcaatcgtctaagatcaagaaagaagtacaggag
cttaaacatcccacgaatacagtcagtaaccttgttagtaaaccatgtcccgcggagaaa
cctgaagtcaaggttaaaccaccactggcacctaagccgcagctgcctcctaaacctcag
attattccccccaagtctcccaagcatgggaaatcctacgcccactgcaatggagatgcc
tgtggacgtctgtcttctgacctgttggaaatggagccggaaactatggagttcaagtcg
gtcacgtacggtacaggaggttcgccgctcatcactgcagtgcggtgtaacaagcaagcg
ttaccagtcacggcactgcaaacaaaagtggaacagacaaaacggcctaaagacgatgca
caacgtgtcgttttcaaagacaaaacatacattcctgacaaaatggagccttctgaagtg
acgaaaagtcacggcactacaaaaaaactacaaaatgcatcccttatccttcgctcaagt
tcaggctcgaagttatctgctccccctccagtaccaccaaaacccacttcgcccaaaatt
ctccatcctttgacattagttgctagctctccagtctctccaacagatccaaacaaaagc
atctttaaagacagcacaagtccaccaaacggtattcacccctggagcagctgcaatggc
agtgtccagtcaggaccaagaagggtctctgtgagccacgagagcctgtcgcccaaaaat
gctgacgcatcaattgccacctcgctcacctcaaacagctccaaagcggttactggccag
gaaagtagagaagagagaagatctgggtctggcaccgatctgaggagtagctcttctagc
ctcggaggcagactatctgcatctgctctaagagggaaaattcaggcgcttccctggtac
atgactcgttcgcaggagatattagggactctggactacccctccaccagctcaatcaat
ggcgatacatctggctttgggtcaggtttgtctgtagcgagtgggttgtcggacacaaac
aagacccctgtgaaggataaagaaacagcggcatccaaatcaggcggaaaaggcaatctt
ttagaggatggagctgaggtcgtcatagccaccattaaggaggcaggggacgtaagctca
tacttaagaaaggtcaatgggacaaatgggtcacatccaaatctcaattttgcaagcaac
agtgcgcacaatgtctcatcagaacaacctcagtcacggacccactccgcggtgggaata
ggaggcatatccaacatgcagatcgggggcgactcgccaacgtcttctctcggagacggc
acccctccgcaacaacgagaggcctgcggctgccgtactgtttacgccaactgtttcagc
ggcgacaacgaggatggcatcagctttgacgaggagctgacagtttatgagttctcccgc
cgcacgcgtccaaaaacaacacgacctccgccagttccttcgcccaccacacccgctcca
aatcccaatattctgtcactgctcagagacaatcctcgaccactttctactttctccact
gcctcctctgaactcagtcccttagtttcgtgtccggtgtcaccgacaacctcgctccgg
agtcccctatgttcccttaccaacaagaactacggtagcctgaaaggaggttttgcctct
ctacgacaagatatagatcagcttttgttggtcttggagagggctttacccgaaccgatg
cagacaaacatcctgtcaaagcaggatggcgcagggcccgaccccaatcacaatgggagt
gaaggcagcgcgatgcaaacaggttgtacggggtgcagtcccgccaacatgacagaggct
gagaggaatctcctccaagctgaagcgcgacgattggcgtccgggtgtcagcgggccaca
cgtgtaggctgggctcccgacgaagccctccggtctttatcgaatagtttcggtgcgttg
gttcagctatcggcggcatgcatgcgaaccagtccgtgcgccgactgcgacagctgccat
agtgcaagcttggctgatgacagccacgagcctatggacaagttgaaagagattgtggct
ctgtaccgagaatttgttggggccgtggagacagccggaaccggcactggtggcaagagc
gtcggccttaatgggtcgggacagagccagggagaaggcgatggcgtcaggctgcttgcc
aaacgctgcactgtactcatctcatctgtgtttgcgctcacacagctcttccggacaccc
acgttagtctcctctgatactgctagcggtgtgccgctcaacttttaa
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