Syngnathus scovelli (Gulf pipefish): 125984240
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Entry
125984240 CDS
T08785
Name
(RefSeq) synaptopodin isoform X1
KO
K21112
synaptopodin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
125984240
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
DUF6487
Motif
Other DBs
NCBI-GeneID:
125984240
NCBI-ProteinID:
XP_049602190
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Position
1:7989417..8002363
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AA seq
1141 aa
AA seq
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MEMEKGHISLRRGVSWSPGGLTKSIQATQSTTVECNVTHEMTRLNTEQMSSKTTLSRSVS
LSEKELKEARQRSHIIAAQLTVPSSSSSRGVQLFKRRKQRVSAFTLESGGVCSKEDKGGN
VKANPSCSKLTWAERSCEEKDKDLNYENCTSSPLFVSIGSIPATTDNMEEQGNRHVKEDV
AEPSGIQDRHFLPVKEIDEQEEEEQDPIYKELEGKVVDELPPERENTNPIAMSLMEREAA
MNGDHPGTAPLEKLSNGCHGPPMTAVSTSKQTTIINRTARPFFSPLTVQFHEATSPITDN
LPSRSAFSAPQPEVVSPPPPLAYTTPPLPAFTDKPPKSDYISSPVASNTNCPPPAAFTAS
QSATLPLPQYRPPTAPKPSTFVPQLCSGRTSAPPIKTGFLEDSAAKRPTKKPMFTFKEKK
VVSPNPELLSMVQGVDEKKKHRHRSVPDPASEEELLALGAEASNFLAKEDDRAEEAKAPE
WASCLKSFRTYTRVQHKPEQTLNDASGKGAELFAKRRSRMENYVIDNQKAGHHVRSPSPT
MSLPPSWVYPSNMPGRVKAIAKNSDMCAQLAQNIKAQQSAKPKPRQTAPARQVQETPPLE
NGCSKIEMDLSKHRPYQLNSSLFILKPVKDPLSTLPKGAPQSKNEMTFSRQTSLPNNPAT
LFRTQFQSPHLPVGSITRVEYPENPSCGKTSAAFSPAHVSSNRLGIQAPRPRFSAKKAGI
EAQSPREPSATEPASATRLGLTRKFSSPDCLAGTTWTSGLQTQRPPATTSGRSVTSPVPF
SRVTRSQSPMSSQNIQLSTVSSASRPPQTSTSTSPCSPPWGSKCQSPMAPRNIQSSTHSS
GHDFRFQTSHSSRSLPWSSRCQSPAVSLQSTHASHISSKTSTNTSPISPPWGSRCQSPMV
STSTEKSTLSSLSSSRPFQTSTTAPHRSPPWSPRCQSPIVIQTSAISTSKLSKPPTNTSS
VSPPWGSRSQSPALSHTSLSFPSAHRLSISSASSPVPPPKDSRCMSPINNNFDSKANHRM
LAKNIINAAKRKNSPSPGALSARSLPISPVGYSHHGYDCKPFQSQPLGGQSPTFTSPPPT
PTQQICSPVRLYNTRSLTDSDASIESEDSGLRLPGMHSYNTCPRGWGGSLRVKKSTISTD
L
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagaaaggacacatatctttgcgtagaggagtgagctggagtccaggagga
ttgactaaatctatccaggcgacgcaaagcaccactgtggagtgcaacgtgacacatgaa
atgactagactcaacacggaacagatgagcagcaaaacaactctatccaggagtgttagc
ttatctgagaaggagctaaaagaggcccgccagaggagccacatcattgcagctcaactc
accgtcccttccagctccagttccagaggcgtgcaactcttcaagcggcgcaagcagagg
gtcagcgcctttacactggaaagcggtggcgtgtgctcaaaggaggacaaaggtggcaac
gtgaaagccaacccgtcatgtagcaaactaacatgggcagagagaagttgtgaggaaaag
gacaaagacttaaactacgagaattgcactagcagcccactatttgtgtctatcgggagt
ataccagcaacaactgataacatggaggaacaaggcaaccgccatgtcaaagaagatgtc
gctgagcccagtggtatccaagataggcatttcctccccgtaaaggaaatagatgagcag
gaggaggaagaacaagatccaatctacaaagaacttgaaggcaaagtcgtggatgagctt
ccacccgagagagaaaatacaaatccgatcgcaatgagtctaatggagagagaggcggcc
atgaatggagatcatccgggaacagctcctcttgaaaagctttcaaatggctgccatggg
cctccgatgactgctgtgtcgacctcgaagcagaccaccatcatcaatcgaactgccagg
ccgtttttctcaccgctgacggtgcagtttcatgaggcaacgagtcctatcacggacaac
cttccttctcgttctgcattcagtgctccccagccagaggtggtttcacctccgcctccc
ttggcatataccacacctcctctaccggccttcaccgacaagcctccaaaaagcgattac
atcagttcacctgttgcgtctaacactaactgtccaccacctgctgcctttactgcatct
cagagtgccactttgccccttcctcaatacagaccaccaacagcgccaaagccttctacc
ttcgttcctcagctttgttcagggaggacgtcagcgccaccaatcaaaacgggatttctt
gaggatagtgctgccaagcgtccaacaaaaaagccaatgttcacattcaaagagaagaag
gttgtatcgccaaaccctgagcttctttctatggtgcaaggggtggatgaaaagaagaag
cataggcatagatctgtgcctgatcccgcatctgaggaggagttattagctctgggtgca
gaagcgtccaatttccttgccaaagaggatgacagggctgaagaagccaaagccccagag
tgggcctcttgtcttaagagcttcagaacctatacacgagtacaacacaaaccagaacag
accctgaatgatgcatcaggaaaaggcgcagagctttttgccaagcgtaggtcaagaatg
gagaactacgtcattgacaatcagaaggcaggtcaccatgttagatctccttctccaaca
atgtctttgccaccatcttgggtttacccatccaatatgccgggtagggtcaaagctatt
gcgaaaaactcggacatgtgcgctcaacttgcacaaaacataaaagcccaacaaagtgca
aagccaaaaccaagacaaacagcaccagcgagacaagttcaagagacacctcctcttgag
aatggttgctccaagatagagatggacctctcaaaacaccgaccctaccagctaaactca
tcactcttcatccttaagccagtcaaagacccgctgagtacccttccgaaaggagcacct
cagtccaaaaacgaaatgactttttctcgacagacttccttgcctaacaaccctgccact
ctctttcgcacccagtttcaatctccccatcttccggtcggctccatcacaagagtagaa
tatccagaaaatccgtcttgtggaaagacatcagctgctttttctccagcccatgtgtca
tctaatcggctggggattcaggcaccaaggccgagattttctgccaagaaagcggggatt
gaagcacagagtccaagggaaccctccgcaactgaaccagccagtgcaactcggctgggc
cttacaaggaagttcagcagccccgactgtcttgccggaacaacgtggacgtctggtctt
caaacacagcgtccccctgcaaccacctccggccgatcggtcacatcacccgttcctttt
tcaagggttacaagaagccaatctcctatgagcagccaaaatattcagctttccacagtt
tcgtcagcttccaggccgccacagacctctacatccacatctccatgttcaccgccttgg
ggttcaaaatgccaatccccaatggcaccccggaatatccaatcatccacccattcctct
ggtcatgatttcagattccaaacatcccattcttctcgttcgctaccatggagttcaagg
tgccagtccccggcagtcagtttgcaatcaacacatgcttcgcatatttcgtctaaaaca
tctacaaacacctccccaatctctccaccttggggatcaagatgccagtctcccatggtg
agcacgagcaccgagaagtccaccctctcctcactttcttcttccagaccatttcaaaca
tccacaactgcacctcaccgttctcctccttggagtccaaggtgtcaatcaccaatcgta
atccagacttctgctatttctacttccaaactttccaaaccaccaacaaacacttcttct
gtctcaccaccttggggctcacgttcccagtctcctgcactttctcatactagtttgtct
ttcccctctgctcaccgtctgtccatctcctctgcctcttctcctgttcccccacccaag
gacagtcgctgcatgtccccaatcaacaataatttcgactcaaaggctaaccatcgaatg
ctggcaaagaacataatcaatgcagccaaacgtaagaacagcccctcgccgggtgcgttg
agcgctcgcagcttacccatctcgcctgtgggatattcccaccatggctatgactgcaaa
ccattccagtcacaaccgctgggggggcagtcgcccaccttcaccagtcctccaccaacc
ccaacacagcagatctgctcccccgtgaggctctacaacacacgctccctaactgactct
gatgcgtccattgagtccgaggactcgggcctgcggttgcctggcatgcattcatacaac
acctgtcctcgcggttggggcggcagtctgagggtgaagaaaagcaccatctccaccgac
ctgtga
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