Syngnathus scovelli (Gulf pipefish): 125984399
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Entry
125984399 CDS
T08785
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125984399 (si:ch211-114c17.1)
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125984399 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
TPR_16
HAT_Syf1_CNRKL1_C
TPR_12
TPR_15
UTP6_C
ARM_TT21_N
HrpB1_HrpK
Pheromone
TPR_21
TPR_9
Motif
Other DBs
NCBI-GeneID:
125984399
NCBI-ProteinID:
XP_049602207
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Position
1:complement(8499109..8505582)
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AA seq
727 aa
AA seq
DB search
MATDGVTGENRELGEPSAMEAAEVPTLPLPEMSDENGFTNSPSEADTDTASFSLPPATKD
EEIDMPADFERLWNTAHDNSQDFTSWTDLLQYCEQEGHIAASQRALMAFLGRYPLCYGYW
KKFADLERRAGNNDKAAEVCVQGLQAIPLSVDLWIHYINLLLGTLDMNQPESPKRIRSVF
EDAVGAAGLDFHSDRLWDLYVEWEKEQGNLRNVTAVLDRVLKVPTQHYNTHYEKFKTHLS
SNEPKEALSPEEYEKVRALCRETQKVERAEQAKEKGKEMPPGEEEPVTPEDIDSEELMQR
IREQVLLRRDKIYQENENEVRKRWNFEDTIKRPYFHVKPLDQIQLRGWHSYLDWELAQLS
KGPGEDHNKDSNKMNTDVKETTEEPEVTAQIEQGTGETEVARDDRRLCVLFERCLIACAL
YEEFWTRYIQYLESHCVDEVRAVYKRACLHLPSNPNLHMRRATFEERHGDLAEARQVLEA
LDKNMPGLAVVRIHRAALERRAGQLEQSEALLQEAVSQSTEKPILHAFYSIKLARLLLKL
VGNPGRARSILQEALEISPGNDKLHLNLLELEASSEPGSSAEAVQECVTRALAAPLAPRT
KILLSQRCLQFVEEYSNSVQSVLSVYEEHQKLLKELGGTKRKAENGDEGQEKLIKGDDAP
ADGTSGQVPPTDPQVPITVPPPPAMTMDVSAQSGGYGGYSNWYQQPQYGSYGYPNTWNYN
QGYYPPS
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacggcgttacgggcgaaaatagggagcttggagagccttcagccatggag
gctgccgaggttcccacgttacctcttccagagatgtcagacgagaatggcttcacaaac
tcgccctctgaggcagacacagacactgcttccttctcactgcctccagccacaaaggat
gaggaaattgatatgccagcagactttgaacgtctctggaataccgcacatgacaactct
caagacttcaccagttggactgacttgttgcaatactgtgagcaagagggccacattgca
gcatcacagagagccctgatggccttcctcggccgttatccactctgctatggttattgg
aaaaaatttgctgatttggagcgtcgtgcgggtaacaacgacaaagcagcagaggtgtgt
gttcagggtcttcaggcaatccctctgagtgtggatctgtggatccactacatcaatcta
cttttgggaacactggacatgaaccagccagagtcgcccaagcgcattcgcagtgtgttt
gaggacgcagttggcgcagcaggcctggacttccactcggaccggctgtgggatctgtat
gttgaatgggagaaggagcaaggcaacttgaggaacgtcacagctgtgctcgacagagtc
ctcaaagttcccacgcagcactacaacacccactacgaaaagttcaagacccacctgagc
agcaatgagcccaaagaagcactttcgccggaggaatatgagaaggtgagggccttatgc
cgggagacccagaaagtggagcgtgccgaacaggccaaggagaaaggaaaagagatgccg
cccggagaggaagaacccgtcacacctgaagacatagactcagaggagctgatgcagagg
attagagagcaagtgctgctccgccgggacaaaatttaccaggagaacgaaaatgaagtt
cgcaagagatggaactttgaagacactatcaaacgtccttacttccatgtgaagccgctt
gatcaaattcagctgcgtggttggcactcctaccttgactgggagcttgcccagctgagc
aaaggccccggagaagaccataacaaagattcaaacaagatgaacacagatgtcaaagag
accactgaggaaccggaagtgacagcccagattgagcaaggaacgggcgaaaccgaggtt
gcccgtgacgaccgcagactttgtgttctctttgagcgctgtctgatagcctgtgctctt
tacgaggaattctggaccaggtacattcaatacctggaatcgcactgcgtggatgaggtt
cgagctgtctacaagcgagcctgtcttcacttgccgtccaatcctaacctccacatgcgg
agggccaccttcgaggagagacacggcgacctggccgaggctcggcaggtgctggaggct
ctggataaaaacatgccaggtttggccgtggttcgtatccacagggcggctttggagagg
agggcgggccaactcgagcagtcagaagctctgctgcaggaggcggtgagccaatcgaca
gagaagcccatcttgcacgccttctactccatcaagctcgctcggctgctgctgaagctc
gtcggaaaccctggcagagctcgcagcattttacaggaagcgctggagatcagtccgggt
aatgacaagctgcacctgaacctgctggagttggaggcatccagcgagccagggtcctcg
gccgaggcggttcaggagtgtgtgacacgagccctggcggcgcctctcgcaccgcgcacc
aagatcctcctctcacagcgctgcctccagtttgtagaagagtacagcaactctgtccag
agtgtgctgtctgtctatgaagagcaccagaagctgctcaaagagctgggcgggacaaag
agaaaagcagagaacggggatgagggccaagagaagctgatcaaaggtgatgatgcccca
gcagatggcacttcaggacaagtcccgcccactgatccccaggtcccaatcacagtgccg
cctcccccagcgatgaccatggatgtgagtgcccaatccggcggctatggcggatacagc
aactggtatcagcaaccacagtatggcagttacggctacccaaacacctggaactacaac
cagggatactatccacccagctaa
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