Syngnathus scovelli (Gulf pipefish): 125984629
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Entry
125984629 CDS
T08785
Name
(RefSeq) integrin beta-1
KO
K05719
integrin beta 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03271
Virion - Rotavirus
sscv04145
Phagosome
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04514
Cell adhesion molecules
sscv04530
Tight junction
sscv04810
Regulation of actin cytoskeleton
sscv04820
Cytoskeleton in muscle cells
sscv05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
125984629
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125984629
04514 Cell adhesion molecules
125984629
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125984629
09144 Cellular community - eukaryotes
04510 Focal adhesion
125984629
04530 Tight junction
125984629
09142 Cell motility
04820 Cytoskeleton in muscle cells
125984629
04810 Regulation of actin cytoskeleton
125984629
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125984629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125984629
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125984629
04515 Cell adhesion molecules [BR:
sscv04515
]
125984629
04090 CD molecules [BR:
sscv04090
]
125984629
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
125984629
Exosome [BR:
sscv04147
]
Exosomal proteins
Proteins found in most exosomes
125984629
Cell adhesion molecules [BR:
sscv04515
]
Integrins
Integrin beta subunits
125984629
CD molecules [BR:
sscv04090
]
Proteins
125984629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
EGF_integrin
PSI_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
125984629
NCBI-ProteinID:
XP_049602629
LinkDB
All DBs
Position
17:complement(6676021..6686951)
Genome browser
AA seq
799 aa
AA seq
DB search
MDPRLIALASMLAFLSFIRAQQEGSVCIKANAQSCGQCIQVAESCGWCTDEGFLTVGESK
SARCDDLESLKTRNCNEAKIQNPRGGIVINKNKPVTNRKKDDTDKPKPEQITQIQPQKLT
LTLRSGEPQTFDLKFKRAEDYPIDLYYLMDLSFSMKDDLDNVKNLGTDLMREMQTITSDF
RIGFGSFVEKTVMPYISTTPARYKNPCTGNQNCTSPFSYKNVLKLTNKGDQFNQLVSQQQ
ISGNLDSPEGGFDAIMQVAVCEEQIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGK
CHLENNMYTMSHYYDYPSIAHLVQKLSDHNIQTIFAVTEEFQPVYKELKNLIPKSAVGTL
SSNSSNVIKLIIDAYNSLSSEVILENGRLPEGVSITYKSICKNGVEGTGENGRKCSNISI
GDEVMFKISIESEKCPSHGKQESIKIKPLGFTEEVEVVLNFICECPCSARGEPNSNKCDA
GHGTFECGACKCNEGRIGRLCECSTDEVRTEDLDANCRKDNGTEICSNNGDCVCGTCECK
KRDNPAEIYSGKYCECDNFNCDRSNNKLCGGHGRCECRVCVCDDNYTGSACDCSLDTSTC
LAKNGQICNGRGSCECGVCKCTNPKFQGPTCEICPTCPGVCAEHKECVQCRAFQAGEKKE
TCERDCSDFVLIKVKDREKLPQPTDQSFPLTHCKERDANDCWFYYTFAIRNDTKEVYVVE
TLECPAGPDIIPIVAGVVAGIVLIGLALLLILKLLMIIHDRREFAKFEKEKMNAKWDTGE
NPIYKSAVTTVVNPKYEGK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggatccacggctaattgcgctagcatcgatgttagcatttctgagctttatccgagcg
cagcaagagggaagtgtgtgcatcaaggccaacgctcagtcgtgcggtcagtgcatccaa
gtggccgagtcatgcggctggtgcacagatgagggcttcctcacggtaggcgagtccaag
tcggctcgctgtgacgacctggaatctctgaagaccagaaattgcaacgaggccaaaatt
cagaatcctcgcggcggcatcgtcatcaacaagaacaaaccggtcaccaaccgcaagaag
gacgatacggacaagcctaaacccgagcagatcacgcagatccagcctcagaagctcacc
ctcaccctcagatcgggcgagccgcagacttttgatctgaagttcaagcgagccgaggac
tatcccatagacctgtactacttgatggacctgtccttctccatgaaggacgatctggac
aacgtcaaaaacctgggcacagacctcatgagggaaatgcagaccatcacctcagacttc
aggattggtttcggctcgtttgtggagaagacggtgatgccgtacatcagcaccactccg
gcgcgctacaagaacccatgcacgggcaatcagaactgcaccagccccttcagctacaag
aacgtcctgaagctgaccaacaagggcgaccagttcaaccaactggtcagccagcagcag
atctcgggaaacctggactctcccgagggaggctttgacgccatcatgcaggtggccgtg
tgcgaggagcagatcggctggcggaacgtcactcgcctcctcgtcttttccacggacgcc
ggcttccattttgccggggatggaaaactgggcggcatcgtgctccccaacgatggcaaa
tgtcacctggagaacaacatgtacaccatgagccactactatgactacccgtccattgcc
catttagtccagaaactgagcgaccacaacatccagaccatctttgcagtcactgaagaa
ttccaacctgtgtacaaggagctgaaaaatctcatccccaaatcggccgtgggcacgttg
tcgtccaactccagcaacgtcatcaaactcatcatcgacgcctacaactctttgtcatcg
gaagtcattctggaaaacggcagacttccagaaggggtctccatcacctacaagtccatc
tgtaagaatggcgtggagggaaccggtgagaacggcaggaagtgctccaatatctccatt
ggagatgaggtgatgttcaagatctccatcgagtccgagaagtgcccgtcgcacggcaag
caggagagcatcaagatcaaaccgctgggcttcaccgaggaggtggaggtggtcctcaac
tttatctgcgagtgtccgtgctccgcccgcggagaacccaacagcaacaagtgcgacgcc
ggccacggcaccttcgagtgcggcgcctgcaagtgcaacgaaggtcgcatcggacgtctg
tgcgagtgcagcacggatgaagttcggacggaagatctggacgccaactgccgcaaagac
aatggcacggagatctgcagcaacaacggtgactgcgtgtgcggaacgtgcgagtgcaaa
aagcgcgacaaccccgcggagatctacagcggcaagtactgcgagtgcgacaacttcaac
tgcgaccgctccaacaacaagctctgcggaggccacggacgctgcgagtgtcgcgtgtgt
gtgtgcgatgacaactacacgggcagtgcgtgcgactgctccctggacacgtccacctgc
ctggccaagaacggacagatctgcaacggccgcggaagctgcgagtgcggcgtctgcaaa
tgcaccaaccccaagttccaagggcccacctgcgaaatctgtcccacctgccccggggtc
tgcgccgagcacaaggaatgcgtacagtgccgagccttccaggcgggcgagaagaaggaa
acgtgcgagcgcgactgcagcgactttgtcctgatcaaggtgaaggatcgcgagaagctt
cctcagcccaccgaccagagctttcccctcacgcactgcaaggagagagacgccaacgac
tgctggttctactacacctttgccatcagaaacgacaccaaggaggtctacgtcgttgag
acgctggaatgcccagccggtccagacatcatcccgattgtggccggcgttgtggccggg
atcgtgttaatcggcttggccctgctgctcatcctcaagctgctcatgattatccatgat
cgccgagaattcgccaagtttgagaaggagaaaatgaatgccaaatgggacacgggtgag
aatcctatctacaaaagtgccgttacgacggtggtcaatccaaagtacgaaggtaaataa
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