KEGG   Syngnathus scovelli (Gulf pipefish): 125984629
Entry
125984629         CDS       T08785                                 
Name
(RefSeq) integrin beta-1
  KO
K05719  integrin beta 1
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03271  Virion - Rotavirus
sscv04145  Phagosome
sscv04510  Focal adhesion
sscv04512  ECM-receptor interaction
sscv04514  Cell adhesion molecules
sscv04530  Tight junction
sscv04810  Regulation of actin cytoskeleton
sscv04820  Cytoskeleton in muscle cells
sscv05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03271 Virion - Rotavirus
    125984629
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125984629
   04514 Cell adhesion molecules
    125984629
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    125984629
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125984629
   04530 Tight junction
    125984629
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125984629
   04810 Regulation of actin cytoskeleton
    125984629
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    125984629
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sscv04131]
    125984629
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sscv04147]
    125984629
   04515 Cell adhesion molecules [BR:sscv04515]
    125984629
   04090 CD molecules [BR:sscv04090]
    125984629
Membrane trafficking [BR:sscv04131]
 Endocytosis
  Phagocytosis
   Integrins (complement receptors)
    125984629
Exosome [BR:sscv04147]
 Exosomal proteins
  Proteins found in most exosomes
   125984629
Cell adhesion molecules [BR:sscv04515]
 Integrins
  Integrin beta subunits
   125984629
CD molecules [BR:sscv04090]
 Proteins
  125984629
SSDB
Motif
Pfam: Integrin_beta Integrin_b_cyt Integrin_B_tail EGF_integrin PSI_integrin I-EGF_1 EGF_2 EGF_Teneurin vWA_SIBA-E
Other DBs
NCBI-GeneID: 125984629
NCBI-ProteinID: XP_049602629
LinkDB
Position
17:complement(6676021..6686951)
AA seq 799 aa
MDPRLIALASMLAFLSFIRAQQEGSVCIKANAQSCGQCIQVAESCGWCTDEGFLTVGESK
SARCDDLESLKTRNCNEAKIQNPRGGIVINKNKPVTNRKKDDTDKPKPEQITQIQPQKLT
LTLRSGEPQTFDLKFKRAEDYPIDLYYLMDLSFSMKDDLDNVKNLGTDLMREMQTITSDF
RIGFGSFVEKTVMPYISTTPARYKNPCTGNQNCTSPFSYKNVLKLTNKGDQFNQLVSQQQ
ISGNLDSPEGGFDAIMQVAVCEEQIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGK
CHLENNMYTMSHYYDYPSIAHLVQKLSDHNIQTIFAVTEEFQPVYKELKNLIPKSAVGTL
SSNSSNVIKLIIDAYNSLSSEVILENGRLPEGVSITYKSICKNGVEGTGENGRKCSNISI
GDEVMFKISIESEKCPSHGKQESIKIKPLGFTEEVEVVLNFICECPCSARGEPNSNKCDA
GHGTFECGACKCNEGRIGRLCECSTDEVRTEDLDANCRKDNGTEICSNNGDCVCGTCECK
KRDNPAEIYSGKYCECDNFNCDRSNNKLCGGHGRCECRVCVCDDNYTGSACDCSLDTSTC
LAKNGQICNGRGSCECGVCKCTNPKFQGPTCEICPTCPGVCAEHKECVQCRAFQAGEKKE
TCERDCSDFVLIKVKDREKLPQPTDQSFPLTHCKERDANDCWFYYTFAIRNDTKEVYVVE
TLECPAGPDIIPIVAGVVAGIVLIGLALLLILKLLMIIHDRREFAKFEKEKMNAKWDTGE
NPIYKSAVTTVVNPKYEGK
NT seq 2400 nt   +upstreamnt  +downstreamnt
atggatccacggctaattgcgctagcatcgatgttagcatttctgagctttatccgagcg
cagcaagagggaagtgtgtgcatcaaggccaacgctcagtcgtgcggtcagtgcatccaa
gtggccgagtcatgcggctggtgcacagatgagggcttcctcacggtaggcgagtccaag
tcggctcgctgtgacgacctggaatctctgaagaccagaaattgcaacgaggccaaaatt
cagaatcctcgcggcggcatcgtcatcaacaagaacaaaccggtcaccaaccgcaagaag
gacgatacggacaagcctaaacccgagcagatcacgcagatccagcctcagaagctcacc
ctcaccctcagatcgggcgagccgcagacttttgatctgaagttcaagcgagccgaggac
tatcccatagacctgtactacttgatggacctgtccttctccatgaaggacgatctggac
aacgtcaaaaacctgggcacagacctcatgagggaaatgcagaccatcacctcagacttc
aggattggtttcggctcgtttgtggagaagacggtgatgccgtacatcagcaccactccg
gcgcgctacaagaacccatgcacgggcaatcagaactgcaccagccccttcagctacaag
aacgtcctgaagctgaccaacaagggcgaccagttcaaccaactggtcagccagcagcag
atctcgggaaacctggactctcccgagggaggctttgacgccatcatgcaggtggccgtg
tgcgaggagcagatcggctggcggaacgtcactcgcctcctcgtcttttccacggacgcc
ggcttccattttgccggggatggaaaactgggcggcatcgtgctccccaacgatggcaaa
tgtcacctggagaacaacatgtacaccatgagccactactatgactacccgtccattgcc
catttagtccagaaactgagcgaccacaacatccagaccatctttgcagtcactgaagaa
ttccaacctgtgtacaaggagctgaaaaatctcatccccaaatcggccgtgggcacgttg
tcgtccaactccagcaacgtcatcaaactcatcatcgacgcctacaactctttgtcatcg
gaagtcattctggaaaacggcagacttccagaaggggtctccatcacctacaagtccatc
tgtaagaatggcgtggagggaaccggtgagaacggcaggaagtgctccaatatctccatt
ggagatgaggtgatgttcaagatctccatcgagtccgagaagtgcccgtcgcacggcaag
caggagagcatcaagatcaaaccgctgggcttcaccgaggaggtggaggtggtcctcaac
tttatctgcgagtgtccgtgctccgcccgcggagaacccaacagcaacaagtgcgacgcc
ggccacggcaccttcgagtgcggcgcctgcaagtgcaacgaaggtcgcatcggacgtctg
tgcgagtgcagcacggatgaagttcggacggaagatctggacgccaactgccgcaaagac
aatggcacggagatctgcagcaacaacggtgactgcgtgtgcggaacgtgcgagtgcaaa
aagcgcgacaaccccgcggagatctacagcggcaagtactgcgagtgcgacaacttcaac
tgcgaccgctccaacaacaagctctgcggaggccacggacgctgcgagtgtcgcgtgtgt
gtgtgcgatgacaactacacgggcagtgcgtgcgactgctccctggacacgtccacctgc
ctggccaagaacggacagatctgcaacggccgcggaagctgcgagtgcggcgtctgcaaa
tgcaccaaccccaagttccaagggcccacctgcgaaatctgtcccacctgccccggggtc
tgcgccgagcacaaggaatgcgtacagtgccgagccttccaggcgggcgagaagaaggaa
acgtgcgagcgcgactgcagcgactttgtcctgatcaaggtgaaggatcgcgagaagctt
cctcagcccaccgaccagagctttcccctcacgcactgcaaggagagagacgccaacgac
tgctggttctactacacctttgccatcagaaacgacaccaaggaggtctacgtcgttgag
acgctggaatgcccagccggtccagacatcatcccgattgtggccggcgttgtggccggg
atcgtgttaatcggcttggccctgctgctcatcctcaagctgctcatgattatccatgat
cgccgagaattcgccaagtttgagaaggagaaaatgaatgccaaatgggacacgggtgag
aatcctatctacaaaagtgccgttacgacggtggtcaatccaaagtacgaaggtaaataa

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