Syngnathus scovelli (Gulf pipefish): 125984671
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Entry
125984671 CDS
T08785
Name
(RefSeq) nucleoprotein TPR isoform X1
KO
K09291
nucleoprotein TPR
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125984671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125984671
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125984671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
PUMA_CC
ZapB
Motif
Other DBs
NCBI-GeneID:
125984671
NCBI-ProteinID:
XP_049602685
LinkDB
All DBs
Position
17:9820358..9837968
Genome browser
AA seq
2475 aa
AA seq
DB search
MAAVLLQALERAELNKLPKGVQNKLEKFVMELQNENEALKTQQDRVIADCEQQYFDTERK
LREGQELVVTATKDLQTLGEENKKLNEELSALKGIDGDTPEDKTQQQSKSKYEIEAENRE
LARLLEKRTQEVENLTEDVKRLNEKLLETDKVKLELQLKLDERHSSETSVQHREKRMEQE
KELLEKKNEWLSAELKTKTEELLSSNRETGKEILELRGSLKTKTEQVTSLESQLSSLKQS
GENQHKRAEDLNNKLKRAKDELTVMEEKYRNELNAHVKLSSLYKGVAADLETKNQELSRA
VEELSKMVKNTAEDNKRLENKVAETEERNTRLEAELQEKIKKMEKEMENSMLKASGKKCC
VPSLTEEQLDSMCPTAAAIAAIVQPGMKFFDLYNAYSECQTELQLEKQETARLNKTLDDI
LREVESKALVLRRQKEEYETMQGSVASLWNKVEQARTEIYSLQKEKDETKQRCDELEKDK
LRTEKQLDDTSAQVCVLLVELEEIRGNQVTKDEGSTSNISGQVNRPHEIFYRSVEELQMQ
NRSLLGRLRKSEEENTLQQTHTTSARVLELETSVDKLQKELEQLREQKNQQKQLADSNAR
QRDMYKALLSQSTGFDLPSQDISHPAPTQPSAPVTRSTPHRAAATAAAESTQTAQAKAAL
KQLNDSFTLYKKEKAENDKMVNEAHDRLERELTQVRSSNAKLTSQLEFSNKRYEMLQETV
TAFRRETTALQDRNQKMSMTVQRHEHIIYTMTQDLRQANEKLALEEVRVENLTKERDMLK
QAESRLNREKEAMLAEQRNQNLLLTNLKSIQLTMERTDADIRQRLNSKVENLETELASMK
TRLEQEVAQRHTLGRSMDAQLVEAKKQLQTQNTLQQKTREILRNSEKQVAALKAQLSSIS
SGSVSTPATRAATLRTPVRVRSPVQTSQPGLSELAEVKSNLSAAEEQISKLAEQLKIANA
TVDQYRAVVLSLEDSLKNEKAQRSPLEMRFKESQDIQKQLENRIIKVEIMNQEAQEEKRK
ALDALEKQVSDLQRSLKASQADQQEALERATKAVTLEQKATQESLLQTKQAGEAQAKYER
ELMLHAADVEVLKELKKTLQQEAARKGEMEEQLNKCDSLLQEKTTSWTTLEKQLKDEVAS
QSRRCEELVHQNALLHQQMDEMAARIREQQPQQELDVSFNEVEQIQEVLRFVRKEKEIAL
ARYEASEGEARRYKQQMEHQNQELKELQEALNAEREKLQNTVKTLAHKETQLKNIANIST
LQETIKMLKMEREKLDHELQHAQAKVKKLESNISPLHESLSHLSDRNGSLQADKRLLEED
IKHLKAKVQQLVSQQKDGDAEEKQKLTAEREAQQRRITQLVEETAKLKTELTRSSTSTNS
AQSHLKSLRESMTSLRAERDALKKELETKNSDILEKNKTITQVKKIGRRYKTQYEELKVQ
HDKLVEETSAKTQGETSQVEQQELTKSQEEITKVKEELTALKQAMQEAKNSEQELQNAQK
ENQQTKEKLQEIQNQLTLNQNQLTQVQAQLSQTQTQLQQSQKELQQAKTHTQQMQNQLKS
SQCQSQARQNQIQQMQKELQQAKESQKQNLTNQKKLQDSHQQEINNLKTSLSKAEGQLSE
LKGQMDTRHKMTSAQEAENKRLQEQLQELNQANEALRAAQTNQNQNLSIQAGDDNTATDA
NQQLKEELAKLRQELSETKSKEEQLRQQMADKEEKTKKAFVGAKTKINQLNTAKENLSKE
VEELKQCKEELEVRMNAMKSQYEGRLLRLDRELRETHTEPREESQDQSGSKVGDQNRSVD
QRQISLKSPAQDRSSSSNLSEPPTANIRPTPSTPPSNKPTPSPGSKSTPRASIRPMVTPG
AVPMPTPTATVMPTTQTESQEVLMTTGAAGHTVISSLNTPTTITQPTSTQATAFVQPTQQ
QAASQDVGSSIDAERPSTSFAVIGASSSKRNREDEIEEEEMRPESSHAPSTAKKLRLRQM
IALQMEGDEVEDLRDEGQRQDSPDNSQELPEDFSAIPEDDDMEEEGMSQSVPSDRTSPQG
SGLTREVIVIDTDSESRESRGEKPETTGEEEEEEEEGDEEEEEEVEGAEDEEEDDDDEED
DGDDASNLAMKEGEESNEEDGDAEEAGQQPSVPTSADDNDSLCPPEPSHTSEASSNESEA
QREAIHTHPTPSPSSSSLTLRLPQPRRPPHSLPPRLYIQPPASELGPPHAQRQTSQLRRP
SVGRGPQLTPGIGSMQHFFDDDDRMVPSTPTLVVPHRTDGFAEAIHSPQVAGLSTRFRFG
PPEDLLPQASASHSDLGQLASQGGLGMYESPLFLPAHDEDGGGRSVPTTPLQVAAPVTVF
TESLPSDSGDNMASQSVPMVTASTGMSTPGDDVDEVFMEQEEGQTAEVSLDSHTDIETAG
QQSEDASLPSTSQDPDSSTIFNPLCNTSSSVTQRRTVTSQHVMSRTRGRGEGRMLISRRG
ATGRSRGGMGRGSAI
NT seq
7428 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtcctgctgcaagccctggagcgggcggagttgaataaactccctaaaggt
gtccaaaacaagctggagaagtttgttatggagctacagaatgaaaacgaggcgctcaag
acccaacaggacagagtcatagcggactgtgaacagcagtactttgacactgagaggaaa
cttagagagggtcaggagctggtcgtgactgccacaaaagacctgcaaacactcggggag
gaaaataagaaactaaatgaagagctgagtgctctaaagggaattgatggagacactccc
gaagataaaacccagcagcagtccaaatcaaagtatgagatcgaggcggaaaatagagaa
ctggcgcggctgctggagaagagaacacaagaggtggagaaccttactgaggatgtaaag
cgcctgaatgagaaactgttggagacagacaaagtgaaattggagttgcagttaaaactg
gatgagcgccattcctccgagacctctgtgcagcaccgggaaaagcgcatggaacaggaa
aaggagctactggaaaagaaaaatgagtggttatctgctgaactgaagaccaaaactgag
gaactgctgagcagtaacagagaaacaggcaaagagattctggagctccgtggtagtcta
aaaaccaagaccgagcaggtgaccagtctggaaagtcaactcagttctctgaagcagtcc
ggtgaaaaccagcacaaacgagctgaagaccttaacaacaaactgaaacgggctaaggat
gaactgactgtcatggaggagaaataccggaatgagctcaatgctcatgtcaagttatct
tctctctacaagggtgtcgcagcagacctggaaactaaaaaccaagaactgagcagggct
gttgaagaactcagcaaaatggttaaaaacactgccgaagataacaaaaggctggaaaat
aaggtggctgaaacagaggagagaaacacccgtttagaagcagagcttcaagagaagatc
aagaaaatggagaaagagatggaaaattccatgctgaaggcctctggcaaaaaatgctgt
gtaccctctctgactgaggagcagctagattccatgtgtcctactgcagccgccattgct
gccattgtccagcctggaatgaagttctttgatctgtataatgcatattccgagtgtcag
actgagctgcaactggagaagcaggagaccgcaaggttgaacaaaacgttggatgacatc
ctccgagaggtggaatccaaagcacttgtcctcagacgccagaaggaggagtatgagacc
atgcagggctcagtggcctccctgtggaataaagtggagcaggctcgaacggagatctac
agtttgcagaaagagaaggacgagaccaagcaacgttgtgacgaactggagaaggacaag
ctgaggacagaaaaacaactggacgatacatctgcacaagtgtgtgtactgctagttgaa
cttgaagaaatccgaggtaatcaagtgaccaaagatgaaggcagtacatctaatatttct
ggccaggtcaacaggccgcatgagattttttaccgaagtgtagaggagcttcaaatgcaa
aacagaagcctgctgggaaggttgaggaagtctgaggaggagaacacattgcaacaaacc
catacaacatcagcacgtgtgttagagttggagacgagtgtggataaacttcaaaaggag
ctcgagcagctgagagagcagaagaaccagcagaagcaacttgctgactccaatgcgaga
cagagagacatgtacaaagccctgctatcacaaagcactggatttgacctgccctcccaa
gatatttcccaccctgcacccactcaaccatcagccccagtaactcgttcaacacctcat
agagctgctgcgactgctgctgctgagtctacgcaaaccgcacaggctaaagctgcatta
aagcagctaaatgactccttcaccttgtataaaaaagaaaaggccgagaacgacaaaatg
gtgaatgaggctcatgacagactggagcgggagctgacacaggttcgctccagtaatgcc
aaattgacttctcagttggagttcagcaacaaaaggtatgagatgctccaagagactgtc
acagcgtttcgtagagagaccacagctctccaagacaggaaccaaaaaatgtctatgaca
gtccaacggcatgagcacattatctacactatgacacaggacctgcggcaagctaatgaa
aaactggcacttgaggaggtgcgtgttgagaacttgactaaagagagagacatgttaaaa
caagcagagagtcgactcaaccgagagaaagaggccatgttggctgagcaacgtaaccaa
aacctactactcaccaacctcaagagcatacagttaactatggagcgtacagacgcagac
attcgtcaacgactcaacagtaaggttgagaatctggaaacagaacttgcctcgatgaag
actcgactggagcaggaagtagcccagagacatacccttggacgcagtatggatgctcag
ttggtcgaagctaaaaaacaacttcagacacaaaacaccttgcagcagaagacaagagag
attttgaggaactccgaaaagcaagtggctgctctgaaagctcaactgtcttccatctca
tctgggagtgttagtaccccagcaaccagagcggcaactcttagaacacctgtcagagtg
cgctctccagttcaaacttctcagcctggcctgtccgagctcgcagaggtcaaaagtaat
ctaagtgctgcagaggaacaaattagcaaactagcagagcagctaaaaattgctaatgct
actgttgaccaatacagagctgtggtactgtctttggaggacagtctgaagaatgagaaa
gcgcaacgctctcctcttgagatgagattcaaggagtcacaagacattcagaagcagctg
gaaaacagaataataaaggtggagataatgaatcaggaagcacaagaggagaaaaggaag
gctttggacgcacttgagaaacaagtgagtgacctccagcgcagtctaaaagccagccaa
gcggatcagcaggaggcgctggagagagctactaaagctgtcactctggagcagaaggcc
acacaggagagcctgttgcagactaagcaagctggtgaggctcaagctaagtacgagcga
gagctgatgcttcacgcagcagacgtggaagtccttaaggagttaaagaaaacattgcag
caagaggcagcacggaagggagagatggaggagcaattgaacaagtgcgactcactttta
caggagaaaaccacaagctggacaactttggagaagcagctgaaggatgaagtggctagt
cagagtcggcgctgcgaagagctggtacaccaaaatgctctcctgcatcaacagatggat
gaaatggctgcaaggattcgtgaacagcaaccacaacaggagcttgacgtctcatttaac
gaggttgaacagatacaagaagtgctcaggtttgtgcggaaagagaaggaaattgctttg
gcccgatatgaggcctctgaaggagaggctcgccgctacaaacagcaaatggaacaccaa
aaccaggaacttaaggagcttcaggaagctctgaatgctgagcgagagaaactgcagaac
acagtaaagaccctggctcataaagagactcaactgaagaacatagccaatatcagcaca
ctccaagagaccatcaagatgctgaaaatggagagagagaaattggaccatgaactacag
catgcgcaggcaaaagtaaagaaactagagtccaacattagcccactgcatgagtcatta
tctcacctttctgacagaaacggctctctgcaggctgataaaaggttgttagaagaagac
atcaaacacttgaaggccaaagtacagcaacttgttagccagcagaaagatggtgatgct
gaggaaaagcaaaaactcaccgctgagagagaagcacagcagaggcgcatcacccagctt
gttgaagagacagccaagctgaagactgagctaaccagatccagcaccagcactaattca
gcccagtctcatctgaaaagcctaagagagtctatgaccagcctaagagcagagagagac
gcactgaagaaagaactagaaacaaaaaacagtgatattcttgagaaaaacaagaccata
acacaggtgaaaaagatcggacggcgctacaagacccagtatgaagagctaaaagtccag
catgataagctggtagaggaaacgtccgctaaaacacaaggtgaaacaagccaagtggag
cagcaggagctcactaaaagtcaagaggaaatcacgaaggtcaaagaggagctgaccgca
ttgaaacaagcgatgcaggaagccaaaaactctgagcaggagcttcagaatgcccagaag
gaaaaccagcaaaccaaggagaagttacaggagatccaaaaccaactgacactgaaccag
aatcagctaacacaggttcaagcccagttgtcccaaacacagacacaattacagcagagt
cagaaagagcttcaacaagcaaagacccacacacaacagatgcaaaaccaactgaaatca
tctcagtgtcagtcgcaagcccgtcagaaccagattcaacaaatgcagaaggagctacag
caggctaaagagtctcaaaagcaaaaccttacaaatcagaaaaaactacaagactcccac
caacaggagattaacaatcttaaaacttcattgagcaaagcagagggtcagctgtctgag
ctcaaaggccagatggacactcggcataagatgacgtctgctcaagaagccgaaaataaa
cgccttcaagaacagctacaggaactaaaccaagctaatgaagctctcagggctgcacag
actaaccagaaccagaacctgtccatccaagccggtgatgataatactgcaacggatgca
aatcagcaattaaaagaggaacttgcaaaactcagacaggagctgtctgagaccaagagc
aaggaggagcagctcagacaacagatggctgacaaagaggagaagactaagaaggccttc
gtcggagccaagactaaaattaaccagctaaatactgcaaaagagaatctgagcaaggag
gtggaagagctcaagcagtgtaaggaggaactagaagtaaggatgaatgccatgaagtca
cagtatgaaggaagacttcttcggcttgaccgggaactgagggaaactcacactgagccc
agagaggaatcccaggaccagagtgggtctaaggtgggtgatcagaacagatctgtagac
caaagacagatctctttgaagagtccagcccaggacaggagcagcagttcaaacctgtct
gaaccaccaacggccaatatccgacccactccaagtactcctcctagcaacaaaccgaca
ccttcccctggcagcaagtcaacaccccgtgccagcatccgacctatggttaccccagga
gctgtacccatgccaacacccactgccactgtcatgccaaccacacagactgaaagccaa
gaggtgttgatgactacaggagctgctggccacactgtcatctccagtcttaatacaccc
acaaccataactcaaccaaccagcacgcaggcaacagcatttgtccagcccactcagcag
caggccgcttctcaagatgtcggcagcagtatagatgcagagcgaccatcgacatccttt
gctgtcattggagcatcgagttcaaagcgaaatagagaagatgagattgaggaagaggag
atgagaccagagagttctcacgccccttcaacggccaaaaaactcagattgagacaaatg
attgccctccagatggaaggtgatgaggtagaagatctaagggatgaaggccaaagacaa
gattcgcctgacaatagtcaggagcttccagaagatttttctgctatccccgaagatgat
gacatggaggaggaagggatgtctcagtctgtcccttcagatcggacgtcccctcagggg
tcaggtctgactcgtgaagttattgttatcgacacagacagcgaaagccgtgagagtaga
ggagagaaaccagagaccacaggtgaagaagaggaggaggaagaggagggtgatgaagaa
gaggaggaggaggtggagggggctgaggacgaggaggaggatgacgatgacgaggaggat
gatggtgatgatgcaagtaaccttgctatgaaggaaggtgaggagagcaatgaggaagat
ggggatgctgaagaggcgggacagcagccatccgttcccacaagtgctgatgacaatgac
tcgctgtgtccccctgagccgtcccacaccagtgaagccagcagcaacgagtcggaagcc
caaagagaggccatccacacccacccaactccctcgccttcctcttcttcacttacactc
cgcctaccccaacctcgaaggcccccgcactccctcccaccacggctctacattcaaccg
ccagcttcagagctaggcccaccccatgcacagagacagacctctcaactccgacgtcca
tcagtaggtcgaggaccacagctgacgccaggaataggaagtatgcaacatttttttgac
gacgatgacaggatggttccaagtactcctactctggttgtcccgcaccgtactgatggc
tttgctgaagctatacattctcctcaggtggctggtctgtccaccaggtttagatttgga
cctcctgaagatctgctccctcaggcttcagcgtcacactcggacctgggacagctagcc
tctcaaggaggtctgggcatgtacgagtctccactattcttgcctgctcacgacgaggat
ggaggaggacgaagtgtccccacaacacctctgcaagtggctgcaccagtgacggtcttc
acggagtctctgccttcagacagtggcgacaatatggcatctcaatctgttccgatggta
actgcttctactgggatgtccacaccaggcgatgatgtagatgaggtcttcatggaacaa
gaagaaggtcaaactgctgaggtttctttggacagccacactgacatagagactgcggga
cagcagagtgaagatgcatcacttccatccaccagtcaagaccctgattcctctacaatt
ttcaacccattgtgcaacaccagcagcagcgtcactcagaggcgcactgtgaccagtcaa
catgtgatgagcagaaccagagggaggggtgaaggacgcatgctgataagccgcagaggg
gccactggacgatcaagaggtggaatgggcagaggtagtgccatctaa
DBGET
integrated database retrieval system
