Syngnathus scovelli (Gulf pipefish): 125984753
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Entry
125984753 CDS
T08785
Symbol
tnn
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125984753 (tnn)
04518 Integrin signaling
125984753 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125984753 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125984753 (tnn)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125984753 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
EGF_Tenascin
EGF_2
Fn3_VIN3
DUF7949
Motif
Other DBs
NCBI-GeneID:
125984753
NCBI-ProteinID:
XP_049602884
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All DBs
Position
17:2745222..2764701
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AA seq
1115 aa
AA seq
DB search
MTTRTQWRALLALLCTVWNLGFATKVDSSAPEQDVTFSHVYNIDVPGVSACKLEGSQDEK
GLQTGSATNGENDIVFRHNIRLQSPTCDCGESESFKSLLYRVNGLEEEVNYLKSQCAQGC
CGNGAGVDSSCRGHGTYQQDTCSCFCYPGWEGPDCSVSSCPDECNDNGRCVDRKCICHQG
YTGEDCSQLMCPDNCNDKGHCVDGKCACFPHFTGDDCSVHKCPHDCNRNGLCFDGQCICD
QGFYGEDCSLVLSPQGLRVVQTTDVSVLVQWLPVPGADYYVLTYHPRGQGSSLKQVRVPS
TDNSHLITGLTSGLSYFVEVHAVIRGIQSGAEEIEATTGVSTVNDIRVLDRTDVSIQVDW
RNPQTEVDHFHLTHTDPSGQEAELNVPRSQEARTKHTIVGLFPGTEYLIAVQAIKGPVKG
NSSSITAATDIDAPTNLITTQVAEDTATVSWDPVQAQIQGYMLTYTSDAGSSGEIPVGRD
MTSFRLVGLKPGVVYTIEIWAFMGDKVSRKTFTMAETEMDAPTNLVAQEETDSSFKVSWE
SVQAEIDGYKLTYRSSDGLSEEIPIGPDRSSHTIKGLRPGVTYTVHIWAVKGNQASRKIS
TQAETESDAPANLLAHDETENSFMVSWDGVQAEIDGYVLTYHSSEGSGDEISLGPDINSY
ILTGLRPGVVYTVYIWAIKGSRASRKISTQAETELDDPANPIARDQTESSFMVSWDGVQA
EMDSYVLSHSSSEGASGEIRVGPQSHSHSLTGLRPGIVYTVYIWAVKGGRSSRKVSVQAE
TDIDAPKDLQALSVTTESAQLTWAAPLADIEGYILTYRDKDGNMKTVEKQLGARETSFVM
SSLQMAKRYIVSIMAYQGNQRSKAVEIVFKTVGILYPFPMDCLQILKNGIKKTGVYTVYI
NNDNSKPIEAYCDMDTDGGGWLVLQRRTTGKLDFMKRWRPYVAGFGNATDEFWMGLDKIY
QMTNTPIRYEARFELGLGPERAYAVYDNFKIASARQKFALTVGNYRGTAGDAMTYHQGRP
WTTIDSDNDIALGNCALTHRGAWWYKNCHLANLNGKWGDNRHSLGVNWEPWKGHLVSLDF
TEMKIRPVGAFSSRKRRSLLAREKSRHNAVHHQEK
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgaccactagaacccaatggagggccctgctggccctcctgtgcaccgtctggaacttg
ggctttgctaccaaagtggattcctcagccccagagcaagacgtcacattcagccacgtc
tataatattgacgttccgggggtgtccgcttgcaaactggaggggagccaggatgaaaaa
ggtttgcagacagggagcgcaacgaatggagagaacgacatcgtcttcaggcacaacatc
aggttgcagtcgcccacgtgtgactgcggggagtccgagagctttaaatcgctcctgtac
agagtgaatggcttggaagaggaagtcaactacctcaagagccagtgtgctcagggatgc
tgcggcaatggagcaggtgtagactcaagttgcagagggcatggtacctaccagcaggac
acatgcagctgcttctgttacccaggctgggaaggcccggactgctccgtgtcctcctgc
ccggacgagtgcaacgacaacggccgttgcgtggatcgcaagtgtatctgccatcagggc
tacacgggagaagactgtagccagctcatgtgccccgacaactgcaacgacaagggccac
tgcgtggacggaaaatgtgcgtgcttcccacacttcactggcgacgactgcagcgtccac
aagtgtccccacgactgcaaccgcaacggcctttgttttgacggccagtgcatctgcgac
cagggtttttacggggaggactgttcattagtgctcagtcctcaaggtctgagggtggtc
cagaccactgacgtctccgtcctggtccagtggttgccggttcctggggctgattattat
gttttaacctatcatccccgaggtcaggggagttctttgaagcaggtccgtgttcccagc
acggacaactcccatctcatcacaggcctgacttctgggcttagttattttgttgaagtc
cacgctgttatcagaggcatccaaagtggagcggaggaaattgaagccaccactggcgtc
tcaacagtcaacgacatccgagttcttgaccggacagacgtctcaatccaagtggattgg
cgcaacccccaaactgaggtggatcactttcacctcacgcatactgacccatcaggtcag
gaggcggagctgaatgtaccgagaagccaagaggcgagaaccaaacacaccatcgtgggt
ttgtttccgggaacagaatacttgattgcagtgcaggccatcaaaggaccggtgaagggc
aactcttcttccatcacagctgctacagacatcgacgccccgacaaacctgatcaccact
caggtagcagaggacaccgccaccgtttcttgggacccggtccaggcccaaatccaaggc
tatatgttgacgtacacctcggatgcgggctccagcggcgagatccccgttgggcgcgac
atgacttcattcagactggttggcctaaagcctggtgtggtctacaccattgaaatctgg
gccttcatgggtgataaggtcagcaggaagactttcaccatggctgagacagagatggac
gctcccactaacctcgtggcccaggaagaaacagacagcagcttcaaagtgtcatgggag
agcgtccaagcagaaattgacggctacaagctaacgtaccgttcttctgacggcttgagt
gaggaaatcccaattgggcctgacagaagttcgcacacgataaagggtttgaggcctggg
gttacctatacagtccacatctgggctgtcaaaggaaaccaagccagcagaaagatctca
acacaagcagaaacagaatccgatgctcctgctaacctcttagcccacgatgagactgag
aacagcttcatggtgtcgtgggacggtgtccaggcagaaatcgacggctacgtcctcacc
taccactcctcggagggctccggcgatgagatctctctggggccggacatcaattcctac
atcctgacgggcttgaggcccggcgtagtgtacacagtctacatctgggccatcaaagga
agtagagccagccgaaagatctccacacaagcagagacagagctcgacgatcctgctaac
cctatagctcgagaccaaaccgagagcagcttcatggtgtcctgggatggcgtccaggca
gaaatggacagctatgtcctcagccacagttcctcggagggcgcgagcggggaaatccgc
gtcggtccccaaagtcattctcacagtctgaccggtttgaggccaggcattgtctacact
gtctacatctgggccgtcaaaggaggcagaagcagcaggaaggtctcagtgcaagcggag
acagacattgacgctccaaaggacttgcaggctttgagtgtcaccacggagtcggctcag
ttgacctgggctgcacctttggctgacatcgagggctacatcctaacctacagggacaag
gatggcaacatgaagactgttgagaagcagcttggagccagagagaccagctttgtcatg
tctagcctccagatggcaaagagatacatagttagcatcatggcttatcaaggaaaccag
aggagcaaagcggtggaaattgtcttcaaaacagttggcatcctctaccccttccccatg
gactgcctccagatcctaaaaaatggcatcaaaaagaccggagtctacaccgtatacatc
aataatgacaactccaaaccaatcgaagcctactgtgacatggatactgatggaggcggc
tggctggtcctgcagcgtcgcaccaccggcaaactagacttcatgaaacgctggaggccc
tacgtggccggtttcggcaacgcgacggatgagttttggatggggctggacaagatatac
cagatgaccaacacgcccatccgctacgaggccaggttcgagttgggcctggggcccgag
agggcctacgccgtctacgacaacttcaagatcgccagtgccaggcaaaagtttgcgctc
accgtcggcaactacagagggacagcaggtgacgccatgacctaccaccaaggtcggccg
tggaccaccatcgactcggataacgacattgccctgggcaactgcgcccttacgcaccgc
ggggcctggtggtacaaaaactgtcacctggccaatctcaacggcaaatggggagacaac
aggcacagtctgggggtcaactgggagccgtggaaaggccacctggtgtccctggacttc
accgagatgaagatccggccggtgggagcgttctccagcaggaagagacgatcgttgttg
gccagagagaagagccgacacaatgctgtccaccaccaagagaagtag
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