Syngnathus scovelli (Gulf pipefish): 125984945
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Entry
125984945 CDS
T08785
Name
(RefSeq) pre-mRNA-splicing factor 38B-like isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125984945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125984945
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125984945
Complex C
U4/U6.U5 tri-SnRNP related factors
125984945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
125984945
NCBI-ProteinID:
XP_049603253
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MANMGSQAMNKPASGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTYHEVV
DEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQLM
GLITHTDSPYIRALGFMYIRYTQPPADLIDWYDDFMDDEEVCHAWCATRPPLLFCILPNC
NIHISQEFLILNNWLIPLFFSLDAHCAAGELDSVSQHCWFACELDVKAGGGCVMTVGEML
RSFLTKLEWFSTLFPRIPVPVQKSIDQQMKSRPRKVPQKEPQEEDEAFEEPGRQGERRRS
RSPRRTPTPRRSPKRSRSRSHHRERDRHGPSYDRELERERERQRKERDARERDRERAERE
RRRSRSAERNHQERRERRRSRSGSRDKRSERKEKERDGGDDRSKRKERDHHRERPAERDR
SRERKSKGENDEKRHKEDRERHREERKAKRSSRSRSRERRHKSGGGEEKSRKSDSSHSRE
KERDGEQRPHKRSRSRERSHHPRETSNDHSKHGDKRRSPSVE
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggctaacatggggagccaggccatgaacaagcctgcgtccggaaaacatggcaatgta
ctgcccctgtggggcaacgaaaagactatgaacctcaacccgatgattcttaccaatgtc
ctgtcctcgccgtatttcaaagttcagctttatgagcttaagacgtaccacgaagttgtg
gatgaaatctatttcaaggtgactcacgttgagccatgggagaaaggaagcagaaagact
gcaggtcagactggaatgtgcggaggggttcgtggagttggcacgggtggcattgtgtca
accgccttctgtctactatacaaactgtttacgctcaagttgacgcgcaaacagctgatg
ggcctcatcacgcacacggactctccctacatccgagcacttggcttcatgtacatacga
tacacacaacccccagccgatttaatcgactggtatgacgacttcatggatgatgaggag
gtatgtcatgcctggtgtgcaaccaggcctcctttgcttttctgcattctacctaattgt
aatattcacatatctcaagaattcctaatcctaaacaactggttaattcccctgtttttt
tctttagatgcccattgtgctgcaggtgaattggatagtgtatctcagcactgttggttt
gcgtgtgagctggacgtgaaggcaggcggaggctgcgtgatgacggtcggcgagatgctg
cgctccttcctcaccaaactggagtggttctcgactctgttccctcgcatcccggtgcct
gtgcagaagagcatcgaccagcagatgaagagcaggccccggaaggtgcctcagaaggag
ccccaggaggaagatgaggcctttgaggaaccggggcggcaaggggaacgtcgtcgttcc
aggagccccaggcggacaccaacacccagacgctctccaaagcggtcgaggagcaggagt
caccaccgggagcgagaccgccacggccccagctacgaccgcgagctggaaagggagcgg
gaacgtcagaggaaggagagggacgccagggagcgggatagggaaagggcagagagggag
aggagacgatcccgcagcgcggaacgaaaccaccaagagcgacgcgagcggcgaagaagc
cgcagcggcagccgggacaaaaggagcgagcgcaaggagaaggagcgcgacggaggcgac
gacaggagcaagaggaaggaacgagaccaccacagggagcgacccgccgagagggacagg
tccagggagaggaagagcaaaggggaaaatgacgaaaagaggcacaaagaggacagggag
aggcacagggaagagcgcaaggccaagaggtcgagccggagtcgcagccgggagaggcgg
cacaagagcggcggcggcgaggagaagagcaggaaaagcgacagcagtcacagtagagag
aaagaacgagacggagagcaacgcccgcacaaacgcagtcgcagccgagagaggagccat
cacccgagagagaccagtaacgaccacagcaaacacggcgacaaacgaaggagtcccagt
gttgagtaa
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