Syngnathus scovelli (Gulf pipefish): 125984980
Help
Entry
125984980 CDS
T08785
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
KO
K04955
hyperpolarization activated cyclic nucleotide-gated potassium channel 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125984980
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
125984980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
125984980
NCBI-ProteinID:
XP_049603307
LinkDB
All DBs
Position
17:7823735..7842742
Genome browser
AA seq
1076 aa
AA seq
DB search
MCTYFGMIHVSAFASRRRRRRWWQYRTEQLYARRGSRVLGFQEALHQGALPSSRRGRSRI
LTAHSRATENRGPHPGDAAHHGQSCRASGVDSEPAVAIDNADADATTGDGRSSVAPISSM
KCNKNGECRRDSGTGSLRSIISKQEKQSGGGSTRAEDAGSAKRGACNSTTASMDGSITPG
GSLAGGHAGESVNPGASGMPEKKDPKVSFSNAPSRKASSSLHGPSQTPQPRNSVTFQKPE
DGPQIVPAEDAETRGSQASFMQRQFSSMLQPGVNKFSLRMYGSQKAVEREQERVKSAGNW
IIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITFFKEETTTPWIIFNVVSDTFFLMDLVLN
FRTGIIIEDNSDIILDPETIKKKYLKTWFIVDFISSIPVDYIFLIVEKGIDSEVYKTARA
LRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVMRIINLIGMMLLLCHWDG
CLQFLVPMLQEFPSDCWVSLNKMENDTWSELYSFAVFKAMSHMLCIGYGRQAPESLSDIW
LTMLSMIVGATCYAVFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHD
YYEHRYQGKMFDEESILGELSEPLREEIVNFNCRKLVASMPLFANAEPNFVTAMLTKLHF
EVFQPHDYIIREGTIGKKMYFIQHGVCSVITKGTLAMKLSDGSYFGEICLLTRGRRTASV
RAETYCRLYSLSVDDFNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILMHKVQHDLNSGV
FNNRENEMIQEIVKFDREMVKLVDLQRPRAMSMTPSIGGIFAPPGQQSQTGSAIATLQQA
VAMSFCPQMANPLVGPGTLQSPRMVRRFQVMQNLQSPVSMSPLQSQPPQTFGGAFGSAIS
SPPVQSPLAASGRTFQYMASVGPSGSQLSLVQHHVPSPTQTQQRPASHKSTHSLHTGSLS
QDSRALSASQPSLPQEGGPQAASAVPSPPPSTRTSNTSIGPPHPNLPGPSGVGRSAGAQQ
RVAFASTPPPSAPAATGPVVAGAAGSGPPDSGVPKKDSIVSLPELDSARSRLSSNL
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgtgcacgtattttggaatgatccacgtttccgcgtttgcctcaaggcgccggaggagg
aggtggtggcagtatcggacagaacaactttacgccagaagggggagccgcgtcctcggc
ttccaggaggctctccaccaaggagccctgccttcctcacgcagaggacgctctcgcatc
ctcacggcccactccagagccacggagaaccgcggacctcatccgggcgatgctgcccac
cacggacagagctgcagagcatctggggtggactcggaaccggccgtcgcgatagacaac
gcggacgcggacgcgacaacgggtgatggtcgcagcagcgtcgcgccaatttccagcatg
aaatgcaacaaaaacggagaatgcaggagggactcgggcaccgggagcctgcgctcgatc
atctccaagcaggagaagcagagcggcggcgggtcgacgagggccgaggacgcagggagc
gccaagcgcggtgcttgtaactcgaccaccgccagcatggacggctccatcacaccaggc
gggtccctcgctgggggacacgcaggcgagagcgttaaccccggagcgagcggcatgccc
gagaaaaaggaccccaaggtgtccttctccaacgcaccgagccggaaagcctcgtcgtcc
ctgcacgggccgagccagaccccgcagccgaggaactctgtcactttccagaagccggaa
gatggaccccaaatcgtccccgccgaggatgcagaaacccgaggcagccaggccagcttc
atgcagaggcagttcagtagtatgctgcagccgggagttaacaaattctccttacgcatg
tacggcagccaaaaggctgtggagagggaacaggagagagtcaaatcagccgggaattgg
attatccacccctacagtgatttcaggttctactgggatttcacaatgctgctgtttatg
gtgggcaacctgatcatcattcccgtgggtatcaccttcttcaaagaagagaccaccacg
ccctggatcatcttcaacgtagtctcggacactttctttctcatggacctggtgctcaac
ttccgcacaggaatcatcattgaggacaactcggacatcattttggaccctgaaaccatt
aagaaaaaatacctaaagacgtggttcatcgtggacttcatctcatccatcccagtggat
tacatattcctcatagtggagaaagggattgattccgaagtgtacaagaccgctcgagcc
ctgaggatcgtccgcttcaccaagatcctgagtcttctgcggctgttgaggctctcaaga
ttaattcgctacatacaccaatgggaagagatcttccatatgacctatgacctggccagt
gctgtgatgcggatcatcaacctgattggcatgatgctgctgttgtgtcactgggatggc
tgcctccagttcctggttcccatgctgcaggagttcccctctgactgctgggtgtccctc
aacaaaatggagaacgacacctggtccgagctgtactcctttgccgtcttcaaggcaatg
agccacatgctgtgcatcggatacggccgtcaagccccagaaagtttgtccgatatctgg
ctcaccatgttgagtatgattgtgggagccacttgctacgctgtcttcatcggccacgca
acagccctcatccaatccctggactcctccagacggcaatatcaagaaaagtacaaacaa
gtggagcagtacatgtccttccacaagctgcctgccgacttccgtcagaagatccacgat
tattacgagcacagataccagggcaagatgtttgacgaggagagcattttgggagaactc
agcgagccgctccgagaggaaattgtcaacttcaattgtcgcaagctggtggcgtccatg
cccttgtttgccaacgccgagcccaactttgtcacggccatgttgaccaaactgcacttt
gaggtatttcagccacatgattacatcatacgggagggcaccatcgggaagaaaatgtat
ttcatccaacacggagtctgcagcgtcatcaccaaaggcacacttgcgatgaaactctct
gatggctcctattttggagagatctgtctgttgacgaggggccgacgcacagccagcgtc
cgagcagagacgtactgtcgactctattctctgtctgtggacgacttcaatgaggtacta
gaagaatatcccatgatgagacgagcttttgagacggtggctatcgaccgattagatcgc
ataggtaaaaagaattccatcctgatgcacaaagttcagcacgatctcaactccggcgtc
ttcaacaaccgtgagaacgagatgatccaggagattgtcaagttcgaccgcgagatggtg
aagctggtggacctgcaacggccgcgggcgatgtcaatgacgccttccatcggcggtatc
ttcgctccccctggccaacagtcgcaaaccggttccgctatcgccaccctccagcaggcc
gtggccatgagcttctgccctcaaatggcgaatccgctcgtgggtccgggaactttacag
tctcctcgtatggtgcgaaggttccaggtgatgcagaacttacaaagcccggtctccatg
tctcctcttcaatcgcaaccccctcagacgttcggaggagcatttggatccgccatctcc
agcccgcccgttcagagccccttagcggcttcaggacggactttccagtacatggccagc
gtgggcccgtcggggtcccagttgtccttagtacagcaccacgtacccagtcccacacag
acccagcagaggcccgcctcacacaagagtacccactcccttcacacggggagcttgagc
caggatagccgagcactgtccgcctcccagccttcacttccccaggagggagggccgcaa
gctgcatctgcggtccccagccctcctccctccacgcgcacctccaatacgtccatcgga
cccccgcaccccaacctgcccgggccctctggggtaggcagatcggcgggcgctcaacag
agggtagccttcgcatccacgcctcctcctagtgctcctgccgcgactgggccagtagta
gcaggagctgctggatcaggtcccccggactctggcgttcccaagaaagattccatcgtc
agccttccggagctagactctgccagatctcggctgtcttccaacttgtga
DBGET
integrated database retrieval system
